Detail information of BGIOSGA014560_circ_g.1


General Information
CircRNA Name BGIOSGA014560_circ_g.1
ID in PlantcircBase osi_circ_014644
Alias Chr04:28612917_28613488(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26834480-26835051  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA014560
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014560-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACAGGACGAAAGTTCCTCAACAAACTTTTTATGCACTGGATCCAAGTAAAGAACATCAGAATG
ACCTCTCTCCTTAGCTCTTTCTTTAGCATAAACGGCcctgaaatccaaggctacgggcgtattc
aattatacttcttcttgtgatgccaggaagaactgttcccgttaatagtggagtagaaataatg
ttgtcctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAAATCCAAGGCTACGGGCGTATTCAATTATACTTCTTCTTGTGATGCCAGGAAGAACTGT
TCCCGTTAATAGTGGAGTAGAAATAATGTTGTCCTGCCAGCAAAAAGGCAATGCTACATTGTTT
AGCTCTCAGAACAAAATATAGTAATAGAAAAATTATCTGACAATGTAGCATCTGATAATTTGGA
GGATTCTGAACTTAACACATCATTCCTTGCTACTCCTAACAAGTTTGAAGATAAGCTAATGCCA
TGTCTATCAAATGATAATTTATGTGCCATAAAATTATTCAGCCCGTTCAACGAAATCCAAAAAA
GTATGCTGACAAGTTACAACATCATTGCAAGAGACATCATTGAGCTATACTTGGAACTGCTTTA
CACTGGTATTTTCCTAGATAGACTTGCAAAGGAAGTCAATTTGAACAAATCCAGTACATATGTA
CACATACCTTCACCATGAATATATTACAGGACGAAAGTTCCTCAACAAACTTTTTATGCACTGG
ATCCAAGTAAAGAACATCAGAATGACCTCTCTCCTTAGCTCTTTCTTTAGCATAAACGGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021