Detail information of BGIOSGA001929_circ_ig.1


General Information
CircRNA Name BGIOSGA001929_circ_ig.1
ID in PlantcircBase osi_circ_008896
Alias Chr01:9309116_9310361(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10045708-10046953  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CG-GT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCAAACAAACGGAGCAGGGGAACACAAAAAAAAAAAAGAAAAAACTAAAATCTTGCGGTGAA
CACGGAGGGAGGGAGGGGAGAGGCAGGGGTTCGTACgtcaaaaggttgtacagccgcttggttg
tttaaggcactcttaactactttacataaagagtaaacagaaaatgtttttggagccaaatttt
agcttcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAAAAGGTTGTACAGCCGCTTGGTTGTTTAAGGCACTCTTAACTACTTTACATAAAGAGTAA
ACAGAAAATGTTTTTGGAGCCAAATTTTAGCTTCCTTCCTGAAAAGTAATCATATTGACATGTG
AAAAACAAGTTTTAGTTTTTCCTTTCTCTCTTATTACTTATTTTATCAGCAAAAGACGGAAAGG
ATCAAATAGTCATACGTCTGAAAAGGCAGAAAGCCGGCATAAATTAGTGACCATCACTCTCGGA
TTAGAAATGCAATGATAGGCAATTAGTTAGTCATCACATAGTACTACTCTTACCAGCGAACAAC
CATAAAAACAGACAAAAATAAAGGAACCGTAAACACGGACAAAAATAAAGGGGAGAACCGAACA
AATAATTTCCTATAGAAAGTGGGAAAGCAAAAGTAGGAAAGAATATAAAAGAGGATATCCTCAT
ATTCATCAGAGATCATAAAGTGGCATGAAAGGAATAAGAATAAGAAAGAATATCCACCGTAAAT
AAATTATTAATAAGTTACAGCTTGTTTCCCGGCAATAAACATGGAGCATAATTAACTAGTGCAC
AAATCTGAACCAGAATTTGGAGATCCTTGTCGACAAGGACTTGGAATGTGCGAGTGGTCTCCAG
GCTCTCTGGAGTGTTCTCCTCCACTGTCCACACAAACCAGCCCCAAAGAAAGAGCCGAACGACA
TGAACAAAAACCAATTATTATTTATTTTTAATGGCTCCCGTCCTACTCGGCTTTCCCCTCCGCC
ATTGTTGCAGCGGGGCTGCCTAAACATGGCAATTGCTCCGCCCATCCCGACGCGTTTGATGGAA
GACTAAGGTGGTGGCCAGAAGCCGCATCAACCATGAATGAACCAATTAACCGAGGCACATCGAG
GAATCAATCACAAACTGCAATCCAGCAAACCGCCGCGTGTTCATTGTTTTAAAGAAACAAGGGG
GGTAAATCGTCGAACACAAGGCGTGCGTGCGCGTGGTGGTCTAATGGCAATGCGTCAGCGTCGC
CCCCCAAAGCGACAAGAACAACCTGAAATCAAATCGGAGGCGAGAGAAAACGTATACCAACCAA
CCTAGTACCAATCTCGCCGCCAAGAACGCACTCTACGTGCGTTCCCCGCCGAGGAAGAAACCAA
ACAAACGGAGCAGGGGAACACAAAAAAAAAAAAGAAAAAACTAAAATCTTGCGGTGAACACGGA
GGGAGGGAGGGGAGAGGCAGGGGTTCGTAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021