Detail information of Os08g0180100_circ_g.3


General Information
CircRNA Name Os08g0180100_circ_g.3
ID in PlantcircBase osa_circ_036166
Alias NA
Organism Oryza sativa
Position chr8: 4692657-4694330  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0180100
Parent gene annotation Similar to SET domain-containing protein. (Os08t0180100-01);Simi
lar to SET domain protein. (Os08t0180100-02)
Parent gene strand +
Alternative splicing Os08g0180100_circ_g.1 Os08g0180100_circ_g.2 Os08g0180100_circ_g.4
Support reads 1
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0180100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGAGTAAAGAAGAGCACGAAGCGTCAGTTTGTCTCTGTGGAAGTCAAATATGCAGGGGCAGC
TATTTAAATTTTTCTGGGGAAGGAGCTTTTGAAAAGggtcttggagttgtttgtaacaaaacgg
gtggatttggtgtagacgactttgtcatcgagttctttggggaggtatgtgatttttacgatca
acaaatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCTTGGAGTTGTTTGTAACAAAACGGGTGGATTTGGTGTAGACGACTTTGTCATCGAGTTCT
TTGGGGAGGTATGTGATTTTTACGATCAACAAATCTTCCTAGATGACATGCAAAGGGATATAAC
AATGGTATAATATTTGTGAAATTGCAATATCTGCAGGTATACCCTTCTTGGAGATGGTATGAAA
AACAAGATGGCATTAAGCATATACAAAACAATAGCGACGATCAAGCTCCTGAGTTTTACAACAT
TATGCTAGAACGGCCAAAGGTATTAGTGCAATCTCAAATTTTTTAATGTGACCTTGCATGTGAC
TTATGTTATTCCAGGTCAAGGTACATATAACTGATCGTTTTACCTTTGTTATGATAAAAAGGGA
GACCGTGATGGGTATGACTTGGTTTTCGTTGATGCAATGCATAAGGCTAACTATGCGAGCAGAA
TTTGTCACTCCTGCAACCCTAACTGTGAAGCAAAGTAAGCTTCTTAATCTTCAGATTAGTACCT
TGTGTGGTGTATGTGTACTGCCTTATCACTCCTCCTATAGTACTTCCTCTGTTTCAAAATATAG
TGTGCATTTTGTTTCGTTAGGACAAGAGTTTGGCCAACGATTACTCTATTATGATATAATTTTT
ACGACACATAAATTTATTAGATTCATATCCAGAAGTACTTATGATTATACTTTTGTATCACAAA
TGATATTCTAATAGAGCGATTGTTGGTCAAAGTCGTCCTAACGAAACAAAATATGCCCTTTGTT
TTGAAACAGAGGGAGTACCTTTTTAGTGTTGACCTGTACTTTTGGACTGTATTTGTGGAAGGGG
TTTACTCTGTTAACTAAATTTATATATGTGGTGTTGCAGTTTGCACGTGATATATGCTTGGCCC
TATCATTTACGCAACTACCTTCTATTGTCTTTTTCATATTTTGAAAGGCCTTTGTGACTTCATT
GTTGTTGTATTCTGTGGTGGATCCATCCTATGCTTTGAACTGTAGTGGGGGAATGCGATTTCAC
TCTTCCTGCATGTCTACTTCATTCTATTTGGTTCACCATGCGCTGTTGTATTTTTTTCTGAACA
AAGTCCCTGATGGCCTGTTTTTGTTGTTCCAGTAGTGAAATTCAGAAATTGAGAACAAACAGGG
AAGGGGGCAGCAATCAATGGATGGCTAACAATTTATAAAAACTGAACTGCACATTTATAGTTTA
AGCATTTTCTGTACACCTGTACCTAATATTGAAGGACTCTTAAGATTGAAGGAGAACTGGCCCA
TATTGGTTTCCACAAAGCCCACTTTCCATGCTAGTCAAATTTATAAATTAGTAAAATGCACTCA
TAAGATTACATGTTATACCTGTAATAATAACTCACGATTATTAAAATATATTTCCAGAGTAACG
GCTGTGGATGGTCATTATCAGATTGGAATTTACACTGTTCGACCAATTGCAGAAGGCGAGGAAA
TCACTTTTGATTACAACTCTGTTACTGAGGTGATTGCCATTTCTAGTTTCTGTATAAGTTCTAA
CGTAAATTGCTTTATCTTATGAATACATTCTAATTATGCCAGAGTAAAGAAGAGCACGAAGCGT
CAGTTTGTCTCTGTGGAAGTCAAATATGCAGGGGCAGCTATTTAAATTTTTCTGGGGAAGGAGC
TTTTGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.137767956
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017