Detail information of AT2G03640_circ_g.2


General Information
CircRNA Name AT2G03640_circ_g.2
ID in PlantcircBase ath_circ_012694
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1105135-1105502  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G03640
Parent gene annotation Nuclear transport factor 2 (NTF2) family protein with RNA bindin
g (RRM-RBD-RNP motifs) domain-containing protein
Parent gene strand -
Alternative splicing NA
Support reads 10
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03640.4:2
AT2G03640.1:2
AT2G03640.2:2
AT2G03640.3:2
AT2G03640.5:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTGCGCTCCGGAGCAGCAACCGGTTTTTCGACAGGTTTACGCTTGACCGGCGAGGCTTTAAC
CTGTAAAGTACCAGCGCTTTGAGCCAGAGATTGAACcgggtaacttctgacttggataccatcc
tttctaatagctccaaaacttttaaatgtttcataaagttgctcaatagtcgcatccataggca
agtttgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGGTAACTTCTGACTTGGATACCATCCTTTCTAATAGCTCCAAAACTTTTAAATGTTTCATAA
AGTTGCTCAATAGTCGCATCCATAGGCAAGTTTGCAACAAATATGGAACTACCCTGAGCTGATA
CGTGAAAAACAAATAATCAAATGAGACAAAAGCAAGTAGAAGAATTTTCAAATTCATTGTTTTT
AACTATTAAACAATGAATAACCAACCTTGTGGTTTAATGCTTTCAGCAGAAGCCTGTTTACGAA
TTGGGGAAGGAGCTTTGCGCTCCGGAGCAGCAACCGGTTTTTCGACAGGTTTACGCTTGACCGG
CGAGGCTTTAACCTGTAAAGTACCAGCGCTTTGAGCCAGAGATTGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.151964493
Functional Information
Coding potential Y
Potential coding position 1105222-1105137(-)
1105218-1105137(-)
Potential amino acid sequence MDATIEQLYETFKSFGAIRKDGIQVRSYPVQSLAQSAGTLQVKASPVKRKPVEKPVAAPERKAP
SPIRKQASAESIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPVQSLAQSA
GTLQVKASPVKRKPVEKPVAAPERKAPSPIRKQASAESIKPQAQGSSIFVANLPMDATIEQLYE
TFKSFGAIRKDGIQVRSYPVQSLAQSAGTLQVKASPVKRKPVEKPVAAPERKAPSPIRKQASAE
SIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYP(-)
MRLLSNFMKHLKVLELLERMVSKSEVTRFNLWLKALVLYRLKPRRSSVNLSKNRLLLRSAKLLP
QFVNRLLLKALNHKLRVVPYLLQTCLWMRLLSNFMKHLKVLELLERMVSKSEVTRFNLWLKALV
LYRLKPRRSSVNLSKNRLLLRSAKLLPQFVNRLLLKALNHKLRVVPYLLQTCLWMRLLSNFMKH
LKVLELLERMVSKSEVTRFNLWLKALVLYRLKPRRSSVNLSKNRLLLRSAKLLPQFVNRLLLKA
LNHKLRVVPYLLQTCLWMRLLSNFMKHLKVLELLERMVSKSEVT(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017