Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G03640_circ_g.2 |
ID in PlantcircBase | ath_circ_012694 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 1105135-1105502 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT2G03640 |
Parent gene annotation |
Nuclear transport factor 2 (NTF2) family protein with RNA bindin g (RRM-RBD-RNP motifs) domain-containing protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 10 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT2G03640.4:2 AT2G03640.1:2 AT2G03640.2:2 AT2G03640.3:2 AT2G03640.5:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.151964493 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1105222-1105137(-) 1105218-1105137(-) |
Potential amino acid sequence |
MDATIEQLYETFKSFGAIRKDGIQVRSYPVQSLAQSAGTLQVKASPVKRKPVEKPVAAPERKAP SPIRKQASAESIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPVQSLAQSA GTLQVKASPVKRKPVEKPVAAPERKAPSPIRKQASAESIKPQAQGSSIFVANLPMDATIEQLYE TFKSFGAIRKDGIQVRSYPVQSLAQSAGTLQVKASPVKRKPVEKPVAAPERKAPSPIRKQASAE SIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYP(-) MRLLSNFMKHLKVLELLERMVSKSEVTRFNLWLKALVLYRLKPRRSSVNLSKNRLLLRSAKLLP QFVNRLLLKALNHKLRVVPYLLQTCLWMRLLSNFMKHLKVLELLERMVSKSEVTRFNLWLKALV LYRLKPRRSSVNLSKNRLLLRSAKLLPQFVNRLLLKALNHKLRVVPYLLQTCLWMRLLSNFMKH LKVLELLERMVSKSEVTRFNLWLKALVLYRLKPRRSSVNLSKNRLLLRSAKLLPQFVNRLLLKA LNHKLRVVPYLLQTCLWMRLLSNFMKHLKVLELLERMVSKSEVT(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |