Detail information of AT1G77380_circ_g.1


General Information
CircRNA Name AT1G77380_circ_g.1
ID in PlantcircBase ath_circ_010619
Alias At_ciR2443
Organism Arabidpsis thaliana
Position chr1: 29076597-29077008  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G77380
Parent gene annotation ATAAP3
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G77380.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGGCGAGCCAACCTAGCTGCGCCGTAGCCCACGCTAGTGACAAAACTCCCGAACCTATCACTG
CCGTTATTATGTGTGCACTCGCCGTCCAAACACTCCatcatgcttatagctgaagcaattgtgt
agccaatagcaacaccaaagatattaagatactgaacaatcccacatagcgtcaccttcacgcc
acctatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCATGCTTATAGCTGAAGCAATTGTGTAGCCAATAGCAACACCAAAGATATTAAGATACTGAA
CAATCCCACATAGCGTCACCTTCACGCCACCTATACAGAACAATGAAAAATGTTAATGCTCTGT
TCTGATCTGATCTCCATTGTCCGATTTCTACTTTGAAGTTTTGTATTTACCGAGATTTGATCGG
ACAGCATCCATATAAGTGTAGTTCCTCTTGCCGGAGATAGGGTCGCCGGAGCGGTAACAAGCAG
CAAGAAGAGAAGAAGTGAAATAAGTGACGGCAGAGAAGAGCAACATCACCACCGGTCCGGCGAG
CCAACCTAGCTGCGCCGTAGCCCACGCTAGTGACAAAACTCCCGAACCTATCACTGCCGTTATT
ATGTGTGCACTCGCCGTCCAAACACTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.284972553
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015