Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os10g0508050_circ_g.1 |
ID in PlantcircBase | osa_circ_007604 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 19451512-19451874 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ui-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0508050 |
Parent gene annotation |
Hypothetical protein. (Os10t0508050-00) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0508000-00:1 Os10t0508000-00:1 Os10t0508050-00:1 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_008591 |
PMCS | 0.542948592 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
19451853-19451871(+) 19451589-19451782(-) |
Potential amino acid sequence |
MNQARSVRQDVQDPSAQRGDVDEPQLQDPGAQHGAGGDGGLLHDAAELHQPGRPRRPVLLLPRH HRPERELRLLRRRQRAHGERHRVAPRRRRRRPPLLQLRGRAGPLPDPPQDQFDKSFSMNQARSV RQDVQDPSAQRGDVDEPQLQDPGAQHGAGGDGGLLHDAAELHQPGRPRRPVLLLPRHHRPEREL RLLRRRQRAHGERHRVAPRRRRRRPPLLQLRGRAGPLPDPPQDQFDKSFSMNQARSVRQDVQDP SAQRGDVDEPQLQDPGAQHGAGGDGGLLHDAAELHQPGRPRRPVLLLPRHHRPERELRLLRRRQ RAHGERHRVAPRRRRRRPPLLQLRGRAGPLPDPPQDQFDKSFSMNQARSV(+) MLCPWILKLRLVDVPTLCTRILYVLPDGASLVHGEGLVELVLGRVGERAGPPPELE*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |