Detail information of Os10g0508050_circ_g.1


General Information
CircRNA Name Os10g0508050_circ_g.1
ID in PlantcircBase osa_circ_007604
Alias NA
Organism Oryza sativa
Position chr10: 19451512-19451874  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os10g0508050
Parent gene annotation Hypothetical protein. (Os10t0508050-00)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0508000-00:1
Os10t0508000-00:1
Os10t0508050-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCGCTACTCCAACTCCGGGGGCGGGCCGGCCCGCTCCCCGACCCTCCCCAGGACCAGTTCGA
CAAGTCCTTCTCCATGAACCAAGCTCGCTCCGTCAGgcaagacgtacaggatccgagtgcacaa
cgtggggacgtcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacg
gagggctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 363
Transcript exons: 19451512-19451874
GCAAGACGTACAGGATCCGAGTGCACAACGTGGGGACGTCGACGAGCCTCAACTTCAGGATCCA
GGGGCACAACATGGTGCTGGTGGAGACGGAGGGCTCCTACACGACGCAGCAGAACTACACCAAC
CTGGACGTCCACGTCGGCCAGTCCTACTCCTTCCTCGTCACCACCGACCAGAACGCGAGCTCCG
ACTACTACGTCGTCGCCAGCGCGCGCATGGTGAACGACACCGTGTGGCGCCGCGTCGCCGGCGT
CGCCGTCCTCCGCTACTCCAACTCCGGGGGCGGGCCGGCCCGCTCCCCGACCCTCCCCAGGACC
AGTTCGACAAGTCCTTCTCCATGAACCAAGCTCGCTCCGTCAG

Genomic sequence GCAAGACGTACAGGATCCGAGTGCACAACGTGGGGACGTCGACGAGCCTCAACTTCAGGATCCA
GGGGCACAACATGGTGCTGGTGGAGACGGAGGGCTCCTACACGACGCAGCAGAACTACACCAAC
CTGGACGTCCACGTCGGCCAGTCCTACTCCTTCCTCGTCACCACCGACCAGAACGCGAGCTCCG
ACTACTACGTCGTCGCCAGCGCGCGCATGGTGAACGACACCGTGTGGCGCCGCGTCGCCGGCGT
CGCCGTCCTCCGCTACTCCAACTCCGGGGGCGGGCCGGCCCGCTCCCCGACCCTCCCCAGGACC
AGTTCGACAAGTCCTTCTCCATGAACCAAGCTCGCTCCGTCAG
Conservation Information
Conserved circRNAs osi_circ_008591
PMCS 0.542948592
Functional Information
Coding potential Y
Potential coding position 19451853-19451871(+)
19451589-19451782(-)
Potential amino acid sequence MNQARSVRQDVQDPSAQRGDVDEPQLQDPGAQHGAGGDGGLLHDAAELHQPGRPRRPVLLLPRH
HRPERELRLLRRRQRAHGERHRVAPRRRRRRPPLLQLRGRAGPLPDPPQDQFDKSFSMNQARSV
RQDVQDPSAQRGDVDEPQLQDPGAQHGAGGDGGLLHDAAELHQPGRPRRPVLLLPRHHRPEREL
RLLRRRQRAHGERHRVAPRRRRRRPPLLQLRGRAGPLPDPPQDQFDKSFSMNQARSVRQDVQDP
SAQRGDVDEPQLQDPGAQHGAGGDGGLLHDAAELHQPGRPRRPVLLLPRHHRPERELRLLRRRQ
RAHGERHRVAPRRRRRRPPLLQLRGRAGPLPDPPQDQFDKSFSMNQARSV(+)
MLCPWILKLRLVDVPTLCTRILYVLPDGASLVHGEGLVELVLGRVGERAGPPPELE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017