Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d049894_circ_g.3 |
ID in PlantcircBase | zma_circ_008025 |
Alias | Zm04circ00027, zma_circ_0001390, GRMZM2G020920_C2 |
Organism | Zea mays |
Position | chr4: 51263986-51265224 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d049894 |
Parent gene annotation |
Mediator of RNA polymerase II transcription subunit 15a |
Parent gene strand | + |
Alternative splicing | Zm00001d049894_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d049894_T017:1 Zm00001d049894_T009:2 Zm00001d049894_T001:1 Zm00001d049894_T011:1 Zm00001d049894_T007:1 Zm00001d049894_T019:2 Zm00001d049894_T003:2 Zm00001d049894_T016:2 Zm00001d049894_T014:1 Zm00001d049894_T027:1 Zm00001d049894_T015:1 Zm00001d049894_T020:1 Zm00001d049894_T010:2 Zm00001d049894_T013:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.229501988 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
51265187-51264039(+) 51264154-51265221(+) |
Potential amino acid sequence |
MFRHRGAFKKHPVHLAFLHKLVIQHSHQLSH*(+) MSVMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAHNQLIYQQQKYLNQKLQQNSLMPS HIQQQQPLLQSTQMQSSQQPMMQMSSGLQPGQTAIPQTQSMTMHSATQSGIQQNPLNSVQQSVQ PLLHQPTQSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQQQPQLMNQQSNLQQNQLMNQQSG VVETQQQQRLPVQSNNLLNMQQTQQMMNQQSMSLHQPQQLANQGNMSSLHQQQHQQNQQQQQLL GTGPNARMHMLQQQKVIQQPQQQQHAQQTSMGLIQPQSQQNQLQQPQQHMMSQFQSQPNQMQQQ LGMQQRLQTSAGMLLQQNNIDQKQYVQAQRGLQEAPSTPGLPPQVSNPAQSSAIPLISQQQTRQ SNASTSVQGSLPSLGQNSSSVSQASTLHNMSVMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQ QQQQAHNQLIYQQQKYLNQKLQQNSLMPSHIQQQQPLLQSTQMQSSQQPMMQMSSGLQPGQTAI PQTQSMTMHSATQSGIQQNPLNSVQQSVQPLLHQPTQSVVRQQQHPQSMHQQSSLQQTQPTQQP NIPLQQQQPQLMNQQSNLQQNQLMNQQSGVVETQQQQRLPVQSNNLLNMQQTQQMMNQQSMSLH QPQQLANQGNMSSLHQQQHQQNQQQQQLLGTGPNARMHMLQQQKVIQQPQQQQHAQQTSMGLIQ PQSQQNQLQQPQQHMMSQFQSQPNQMQQQLGMQQRLQTSAGMLLQQNNIDQKQYVQAQRGLQEA PSTPGLPPQVSNPAQSSAIPLISQQQTRQSNASTSVQGSLPSLGQNSSSVSQASTLHNMSVMPQ NTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAHNQLIYQQQKYLNQKLQQNSLMPSHIQQQQ PLLQSTQMQSSQQPMMQMSSGLQPGQTAIPQTQSMTMHSATQSGIQQNPLNSVQQSVQPLLHQP TQSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQQQPQLMNQQSNLQQNQLMNQQSGVVETQQ QQRLPVQSNNLLNMQQTQQMMNQQSMSLHQPQQLANQGNMSSLHQQQHQQNQQQQQLLGTGPNA RMHMLQQQKVIQQPQQQQHAQQTSMGLIQPQSQQNQLQQPQQHMMSQFQSQPNQMQQQLGMQQR LQTSAGMLLQQNNIDQKQYVQAQRGLQEAPSTPGLPPQVSNPAQSSAIPLISQQQTRQSNASTS VQGSLPSLGQNSSSVSQASTLHNMSVMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAH NQLIYQQQKYLNQKLQQNSLMPSHIQQQQPLLQSTQMQSSQQPMMQMSSGLQPGQTAIPQTQSM TMHSATQSGIQQNPLNSVQQSVQPLLHQPTQSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQ QQPQLMNQQSNLQQNQLMNQQSGVVETQQQQRLPVQSNNLLNMQQTQQMMNQQSMSLHQPQQLA NQGNMSSLHQQQHQQNQQQQQLLGTGPNARMHMLQQQKVIQQPQQQQHAQQTSMGLIQPQSQQN QLQQPQQHMMSQFQSQPNQMQQQLGMQQRLQTSAGMLLQQNNIDQKQYVQAQRGLQEAPS(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |