Detail information of Zm00001d049894_circ_g.3


General Information
CircRNA Name Zm00001d049894_circ_g.3
ID in PlantcircBase zma_circ_008025
Alias Zm04circ00027, zma_circ_0001390, GRMZM2G020920_C2
Organism Zea mays
Position chr4: 51263986-51265224  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d049894
Parent gene annotation Mediator of RNA polymerase II transcription subunit 15a
Parent gene strand +
Alternative splicing Zm00001d049894_circ_g.2
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d049894_T017:1
Zm00001d049894_T009:2
Zm00001d049894_T001:1
Zm00001d049894_T011:1
Zm00001d049894_T007:1
Zm00001d049894_T019:2
Zm00001d049894_T003:2
Zm00001d049894_T016:2
Zm00001d049894_T014:1
Zm00001d049894_T027:1
Zm00001d049894_T015:1
Zm00001d049894_T020:1
Zm00001d049894_T010:2
Zm00001d049894_T013:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAGGCTCCAAACTTCAGCTGGCATGCTCTTACAACAAAATAACATTGATCAAAAGCAATATG
TTCAGGCACAGAGGGGCCTTCAAGAAGCACCCAGTAcacctggccttcctccacaagttagtaa
tccagcacagtcatcagctatcccattgatttctcagcaacagacacggcaatcaaatgcctct
acatctgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1239
Transcript exons: 51263986-51265224
CACCTGGCCTTCCTCCACAAGTTAGTAATCCAGCACAGTCATCAGCTATCCCATTGATTTCTCA
GCAACAGACACGGCAATCAAATGCCTCTACATCTGTTCAAGGTTCTCTTCCTAGTCTTGGTCAG
AACTCGTCGAGTGTCAGCCAGGCATCGACGCTGCATAATATGTCTGTCATGCCACAAAATACCA
TGAACAATGGTTTAGCACAAGGTACTCCACAAGATATGTATGCTGCACAAAGGCAAATGGCTGG
TAGGCAGCAGCAACAACAACAACAACAAGCACATAATCAGTTAATTTATCAACAACAGAAATAC
TTGAACCAGAAATTGCAGCAGAATTCACTTATGCCATCGCACATTCAGCAGCAGCAACCTTTAT
TGCAGTCAACACAGATGCAATCTTCACAGCAGCCCATGATGCAAATGTCATCTGGTCTTCAGCC
TGGGCAGACTGCCATTCCACAAACTCAGTCCATGACGATGCATTCAGCTACACAAAGTGGTATT
CAACAAAACCCATTGAATTCAGTACAACAATCTGTGCAACCATTACTCCATCAGCCTACACAAT
CTGTAGTGAGGCAGCAGCAACATCCACAGTCCATGCACCAGCAGTCTTCTCTGCAGCAAACTCA
GCCAACTCAACAGCCCAACATTCCTTTGCAACAACAACAACCACAATTAATGAACCAGCAGTCA
AATTTACAGCAAAATCAGTTAATGAATCAACAGAGTGGTGTTGTGGAGACGCAACAGCAACAAA
GGCTGCCAGTTCAGTCAAATAATCTTTTGAATATGCAGCAAACACAGCAGATGATGAACCAGCA
ATCTATGTCCTTGCACCAGCCACAACAATTGGCAAACCAAGGAAATATGTCAAGTCTACATCAG
CAGCAGCATCAGCAAAATCAGCAGCAGCAGCAGCTTCTCGGAACTGGGCCAAATGCCCGTATGC
ATATGTTACAGCAGCAAAAGGTAATTCAGCAACCACAGCAGCAACAGCATGCTCAGCAGACATC
AATGGGTTTGATACAACCTCAGTCTCAGCAGAACCAACTTCAGCAACCTCAGCAACATATGATG
TCGCAGTTCCAGTCTCAGCCTAATCAAATGCAGCAACAATTGGGAATGCAACAAAGGCTCCAAA
CTTCAGCTGGCATGCTCTTACAACAAAATAACATTGATCAAAAGCAATATGTTCAGGCACAGAG
GGGCCTTCAAGAAGCACCCAGTA

Genomic sequence CACCTGGCCTTCCTCCACAAGTTAGTAATCCAGCACAGTCATCAGCTATCCCATTGATTTCTCA
GCAACAGACACGGCAATCAAATGCCTCTACATCTGTTCAAGGTTCTCTTCCTAGTCTTGGTCAG
AACTCGTCGAGTGTCAGCCAGGCATCGACGCTGCATAATATGTCTGTCATGCCACAAAATACCA
TGAACAATGGTTTAGCACAAGGTACTCCACAAGATATGTATGCTGCACAAAGGCAAATGGCTGG
TAGGCAGCAGCAACAACAACAACAACAAGCACATAATCAGTTAATTTATCAACAACAGAAATAC
TTGAACCAGAAATTGCAGCAGAATTCACTTATGCCATCGCACATTCAGCAGCAGCAACCTTTAT
TGCAGTCAACACAGATGCAATCTTCACAGCAGCCCATGATGCAAATGTCATCTGGTCTTCAGCC
TGGGCAGACTGCCATTCCACAAACTCAGTCCATGACGATGCATTCAGCTACACAAAGTGGTATT
CAACAAAACCCATTGAATTCAGTACAACAATCTGTGCAACCATTACTCCATCAGCCTACACAAT
CTGTAGTGAGGCAGCAGCAACATCCACAGTCCATGCACCAGCAGTCTTCTCTGCAGCAAACTCA
GCCAACTCAACAGCCCAACATTCCTTTGCAACAACAACAACCACAATTAATGAACCAGCAGTCA
AATTTACAGCAAAATCAGTTAATGAATCAACAGAGTGGTGTTGTGGAGACGCAACAGCAACAAA
GGCTGCCAGTTCAGTCAAATAATCTTTTGAATATGCAGCAAACACAGCAGATGATGAACCAGCA
ATCTATGTCCTTGCACCAGCCACAACAATTGGCAAACCAAGGAAATATGTCAAGTCTACATCAG
CAGCAGCATCAGCAAAATCAGCAGCAGCAGCAGCTTCTCGGAACTGGGCCAAATGCCCGTATGC
ATATGTTACAGCAGCAAAAGGTAATTCAGCAACCACAGCAGCAACAGCATGCTCAGCAGACATC
AATGGGTTTGATACAACCTCAGTCTCAGCAGAACCAACTTCAGCAACCTCAGCAACATATGATG
TCGCAGTTCCAGTCTCAGCCTAATCAAATGCAGCAACAATTGGGAATGCAACAAAGGCTCCAAA
CTTCAGCTGGCATGCTCTTACAACAAAATAACATTGATCAAAAGCAATATGTTCAGGCACAGAG
GGGCCTTCAAGAAGCACCCAGTA
Conservation Information
Conserved circRNAs NA
PMCS 0.229501988
Functional Information
Coding potential Y
Potential coding position 51265187-51264039(+)
51264154-51265221(+)
Potential amino acid sequence MFRHRGAFKKHPVHLAFLHKLVIQHSHQLSH*(+)
MSVMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAHNQLIYQQQKYLNQKLQQNSLMPS
HIQQQQPLLQSTQMQSSQQPMMQMSSGLQPGQTAIPQTQSMTMHSATQSGIQQNPLNSVQQSVQ
PLLHQPTQSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQQQPQLMNQQSNLQQNQLMNQQSG
VVETQQQQRLPVQSNNLLNMQQTQQMMNQQSMSLHQPQQLANQGNMSSLHQQQHQQNQQQQQLL
GTGPNARMHMLQQQKVIQQPQQQQHAQQTSMGLIQPQSQQNQLQQPQQHMMSQFQSQPNQMQQQ
LGMQQRLQTSAGMLLQQNNIDQKQYVQAQRGLQEAPSTPGLPPQVSNPAQSSAIPLISQQQTRQ
SNASTSVQGSLPSLGQNSSSVSQASTLHNMSVMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQ
QQQQAHNQLIYQQQKYLNQKLQQNSLMPSHIQQQQPLLQSTQMQSSQQPMMQMSSGLQPGQTAI
PQTQSMTMHSATQSGIQQNPLNSVQQSVQPLLHQPTQSVVRQQQHPQSMHQQSSLQQTQPTQQP
NIPLQQQQPQLMNQQSNLQQNQLMNQQSGVVETQQQQRLPVQSNNLLNMQQTQQMMNQQSMSLH
QPQQLANQGNMSSLHQQQHQQNQQQQQLLGTGPNARMHMLQQQKVIQQPQQQQHAQQTSMGLIQ
PQSQQNQLQQPQQHMMSQFQSQPNQMQQQLGMQQRLQTSAGMLLQQNNIDQKQYVQAQRGLQEA
PSTPGLPPQVSNPAQSSAIPLISQQQTRQSNASTSVQGSLPSLGQNSSSVSQASTLHNMSVMPQ
NTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAHNQLIYQQQKYLNQKLQQNSLMPSHIQQQQ
PLLQSTQMQSSQQPMMQMSSGLQPGQTAIPQTQSMTMHSATQSGIQQNPLNSVQQSVQPLLHQP
TQSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQQQPQLMNQQSNLQQNQLMNQQSGVVETQQ
QQRLPVQSNNLLNMQQTQQMMNQQSMSLHQPQQLANQGNMSSLHQQQHQQNQQQQQLLGTGPNA
RMHMLQQQKVIQQPQQQQHAQQTSMGLIQPQSQQNQLQQPQQHMMSQFQSQPNQMQQQLGMQQR
LQTSAGMLLQQNNIDQKQYVQAQRGLQEAPSTPGLPPQVSNPAQSSAIPLISQQQTRQSNASTS
VQGSLPSLGQNSSSVSQASTLHNMSVMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAH
NQLIYQQQKYLNQKLQQNSLMPSHIQQQQPLLQSTQMQSSQQPMMQMSSGLQPGQTAIPQTQSM
TMHSATQSGIQQNPLNSVQQSVQPLLHQPTQSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQ
QQPQLMNQQSNLQQNQLMNQQSGVVETQQQQRLPVQSNNLLNMQQTQQMMNQQSMSLHQPQQLA
NQGNMSSLHQQQHQQNQQQQQLLGTGPNARMHMLQQQKVIQQPQQQQHAQQTSMGLIQPQSQQN
QLQQPQQHMMSQFQSQPNQMQQQLGMQQRLQTSAGMLLQQNNIDQKQYVQAQRGLQEAPS(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress