Detail information of BGIOSGA001902_circ_igg.1


General Information
CircRNA Name BGIOSGA001902_circ_igg.1
ID in PlantcircBase osi_circ_008914
Alias Chr01:9645154_9646185(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10601509-10602540  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003249_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAAGAAGAAACTTATAGAGTAAGATGGTATAAAGAAAATAAAAGCAAATGTTCAAAACATCA
TTACAGAACACCGACCTTTTCTGATACTTTTTGGACgttctgtcgacaaatgccaactgctata
atcgtacatgcgtctccgaagaaaccgccgacactgcctcactctccaagaaccataccaaacc
caaatttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTGTCGACAAATGCCAACTGCTATAATCGTACATGCGTCTCCGAAGAAACCGCCGACACTG
CCTCACTCTCCAAGAACCATACCAAACCCAAATTTGTAATCTTTCTTCCAGTGATCAAGCTGCA
CAGGATTGTAGAAACAACATCATGTCAATTCAAAATTATACTCCAAATACAACTAAATGCAGGG
CACGATAAAATTCACCTATGATGGCTAGATATGCTTCTCAAATGCTAAGTTCTGCTGCCTACGA
AAGCTGATATCTTGGAATTTCAAGCATCTGAGATGGCTAGGATTTTGAAGGCGTGTAATTTTCT
TTACCTTTTGCTATTATTTTATTATTCAGCGCAGCTCACTAAGGAAACATCTATATTTCATTAA
TTTACGTTTCTACTTGACCTTCTGATTCAATAATCCAGTTCCAGACTTGGTTTCCCACTTACAT
AAACGTGTTAAAAATAGAGGGCATTGAATCAGTAATAGGTAGCCTGGTGTATAGAATAAGTAGG
GCTGCAAGCTGACCTCTGCAGAAAGAACGAAATTCACGCCGGGGGTCAACCGCTCCTCCAAAAG
AGCAGAAACAACGCCATTGGTATCAATCTTCCCCCTCAGACGACACTGCAAGGTTAAACATAAA
TATACTTTAATTTAATGAGGTGGTTACAACTTCAATAATCAAAATTCTCTAAAAACATAGAATT
TTCCATTTTTGAAAAAAAAAAGGTTCCATAGAAGAGGCAAAATATGCTCAAGTTGTTGCAGCAA
CTTTTACATCCCACATACCATGCTAGACCAACACACAAAAAAAAAAAAAACCGAAAAGGTGGAA
ACAATCAAGATATACCTGTCTCAACATATAATCATAGCCAAAACTTGCTGTTACATCCTTCGCC
ATATGATTGTACATAAAATCAGATGCAAGGGAAACCTGCAAGAAGAAACTTATAGAGTAAGATG
GTATAAAGAAAATAAAAGCAAATGTTCAAAACATCATTACAGAACACCGACCTTTTCTGATACT
TTTTGGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021