Detail information of Os06g0101600_circ_g.1


General Information
CircRNA Name Os06g0101600_circ_g.1
ID in PlantcircBase osa_circ_042217
Alias NA
Organism Oryza sativa
Position chr6: 149749-149900  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0101600
Parent gene annotation Plastocyanin, chloroplast precursor. (Os06t0101600-01)
Parent gene strand -
Alternative splicing Os06g0101600_circ_g.2 Os06g0101600_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0101600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTCGAACACCACGTTGTGAGGGAAGCCGGCGTTGTTCTTGAACGTGATGGTCTCGCCGGACTT
GACGGTGAAGTCaaggtctcgccgggggcgttgaggtactcctcctgcgatatcttggacacgt
cgacgccgctcggaaccgcgtcct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 152
Transcript exons: 149749-149900
AAGGTCTCGCCGGGGGCGTTGAGGTACTCCTCCTGCGATATCTTGGACACGTCGACGCCGCTCG
GAACCGCGTCCTCGTCGAACACCACGTTGTGAGGGAAGCCGGCGTTGTTCTTGAACGTGATGGT
CTCGCCGGACTTGACGGTGAAGTC

Genomic sequence AAGGTCTCGCCGGGGGCGTTGAGGTACTCCTCCTGCGATATCTTGGACACGTCGACGCCGCTCG
GAACCGCGTCCTCGTCGAACACCACGTTGTGAGGGAAGCCGGCGTTGTTCTTGAACGTGATGGT
CTCGCCGGACTTGACGGTGAAGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.383228235
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study