Detail information of Zm00001d019948_circ_ig.1


General Information
CircRNA Name Zm00001d019948_circ_ig.1
ID in PlantcircBase zma_circ_009301
Alias zma_circ_0002756
Organism Zea mays
Position chr7: 79113936-79118466  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCCAGAGTAAACTCAGAGTGTATATATCACCTTTTATTCATGGCACAAGGTACAGTTCCTTT
GGTAGACATTTTACAAAGGTGGAGAAACTTGTTGAGgagagctgcacatcattatattgagaag
aaagtggttaaggtccaagtggatcgttacaagataataccaccttacggtggcaaaaaacaag
aatacaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGAGCTGCACATCATTATATTGAGAAGAAAGTGGTTAAGGTCCAAGTGGATCGTTACAAGATA
ATACCACCTTACGGTGGCAAAAAACAAGAATACAAAAGGGGGTCATTCGACTTAAACAATTAAT
GGCGACCACATCGCTACTAAGGAGACCGTACAACCCTCGAGTCGAAGCCATAAGGAGAGACATG
CTCTTAGCTTGAGCCATCTCCCAAAGCTGCATCTCCTCTTTTGCTCTCATGAAGATGCTATCAA
TGCCGGGCCTTCGTCTGTCAAAGACGCAGTCGTCCCTATGCTTCCACGAGATCCATACCCCAAG
AATAATGAGAAAGTTGAGACCGTCACATGCAAGACCTTGGAGCACCACTCCATAAAACTTCAAC
AGTCTACTTGAGGGGCCATGAACTGAAGATTAGCTTGAATGAGCATCCTGTGCCAGAAATCTCT
AGTGAAGGCACAACCCACTAAAAGATGATCCAAGGTTTTTCTGATCTTGATCACATAAGGGGCA
TCTTTCAGGATAATCCAATCCCCTCCTCTGCAGCCTATCCGCTGTCCAAACTCTACGGTGTGCG
ACCAGCCACAAAAAGAATTTACACTTTGAAGGGGCCTAGGTTTTCCATATTCGATCATAGGGCT
CAAAACCCATCGAGCCAAGGAAAGGAAGAAGCCATCATAGGCTACCTTCGCAGAATACTTTCCG
TTAGGAGTCAGTTGGAAGCAATGAACATCATCCATGGCAGACCTAAGTTGTACAGAGCCAATCA
AGTCCCAAAAAACAAGATGATCTGAGTTGGCCCCAACAGACAAAGCCCCCTAATATCCGAAGTC
TAGGTCTGATTGGTAGTACCTTCCAACACCGATTGCTTGTCAGCTCTCCGCTTAGGAATGATAG
CAAAAAGCTGAGGAGCAAGGTCCTCAGTTCTATGACCAAACAACCACTGATCAGTCCAAAACAA
GGTAGAGGCTTCATCACCGACCACAATCTGCATTGCCATTGAGAAGAACTCCTTGACTTTTGAT
GGAACCTTGATAGTCAAGGAAGCCCAAAGATGTTCTGGTTCTGTTTTGGCTAGCCACAACCACC
TCATCCTGAGCGCCTATGAAAGCTCCCTTAGGCTTGATATACCAAGGCCGCCTAGCTCAAGTGG
GAGACAAACTTTGTCCCATGCCACATGACAGTGCCCCCTTTCACATATTTGCGGCCCCGCCAAA
GGAAGCTCCGCCGTATCTTGTCAATAGCTTTGAAGGCCCATCCCGGTAAGTTCACTGCCATAGC
AAGATAGATAACCATGCCTGTAAGAACATGCTGAACTTGAACTTCCTGTCCAGCTTTAGTCATC
AATTCAGCCTTCCATCCTGATAGTTGGTTTGCTATCTTATGAATAATGGGTTGAACCTAATCCT
TTGTGAGCCTTTTGGTGGCTAAAGGTAGTCCCAGATATTTACAGGGAAACTTTGGAACCTCACA
GTGCAACAAGTTATGCAGCAGGGCTAAGTCTTGATCATCACATCTTATGAGGTACACATTACTC
TTATGAGCGTTGGTACACAGAACGGATGCTTCCCCAAAGAGATTTAGGATGTCCAGAGCATCAT
TTATATCCCTATCATTCGGCCAGAGAAAACAACCACATCATCGGCATAAAGAGAAACGATGCTG
TAAAACCCGTGTAGCTAGCGGCTAAAACAACCCTTCCTGTTCGGCCTTGGTGAACAAAATATCC
AAGAACATCCATGCCCAAAATAAAAAGCATCGGAGAAAGCAGGTCACATTGACGGCCCTGCCGA
TGAAAAATGTGTTGGCCCAGAAATCCATTCAGCAGTACCTGAGTTGAGGAAGTCCATAACATTC
CGCTGATTATATCTCTCCAAATTGGCCTGAAATCCATGTGTTGCATGACTTCTAGGAGGAAGGG
CCATGAGACCGAGTCAAAGGCCTTATTAATGTCAAGCTTGAGGAGAAGACGAGGTTGTTTTTGT
TGATGGAGGAAGCGTGCAGTTTGTTGTACTAGCATATAATTGTCCTGAATAAATCTGCCTTTTA
TGAAAGCACTTTGATAAGGAGAGACCATCTCATGCAATCTACTCGCCAGCTGATTGGCTAGAAG
CTTGGTAATCAACTTGGCGAAGCTATGCACAGGACTAATGGGCCTAAAATCCTTTACTGGAGCA
GCTCCCTCTTTCTTCGGAATGAGAGCAGTATTAAGCACCTGAAAATTCATGAACCTTCTACTCC
CCACTGTCGAAATTGCTGCTATGACATCCATTTTTATAATATCCCAACATGATTTATAAAATCT
TCCGGTGAAGTCATCTGGCCCCAGGGCCTTGTTTGAAGGAAGTTGTTTGATAGTGTTCCAAACT
TCTACAAAAAAGGAGCCATCCAAGGCTGCCAGGTCAAAGCTAGGGATATCCAACTGCTCGAGGT
TGATTGTGAACTCTCTGTCGCTGCATTGCCCCAACAAATAATCATAGTACTCATCGACCATGCC
TGTCTTATCCTCAAGGCTGGTATGAACTTCACCGTTAGATACTAACTTGGTAATAAAATTCTTT
TTCTTTCTAGATCGAGCATGCATATGGAAAAGCTTGGTGTTGGCATCTCCCTCCCGGAGCCAAC
CTATTCTTGATCTCGACCTAGCAATGGTCCTATTAAGGGAAGTCAATGCTAGGGAGTGCTTCTT
GAGACTATTCATCAACCAGAGCTCTGCTGGTGATAGAGTTTGCCCATCTTGAGCAATCTCCAAC
TGATGTAAAACCTCCCGAGCTAAAGCCAATTTGGAAGAAATGTGCCACACTCTCATATCACTCC
AGGCCCACAATCCCTTCGCCACTGCTTTCAGTTTTTTATCGAGAGTCAAAAAAGGGCAAACGTT
AGTCGGGACTGAACCCCATGCAGATTGGACTGCTTCATGAAGCCCCTCATCTTTTGGCTAGAAG
GTCTCAAAATGAAATCTGCGCCTGCCAGACTTATTTTCTTTCAGGCCCAACAGAAGGGGGCAAT
CATCTGAATAATTTGAGTCTGTACTGTGGAGTTGAGCGTTAGGTAACATATCCTCCCAGTCCAC
AGTGTATAGAACTCTGTTGAGCTTAACCAAGGTTGGTGAGTTCTGCTGGTTAGACCAAGTAAAC
TTTCGACCAAACAGAGGTAAATCATTTAAGGCAAGATCATTGGTTAAGTTCCTGAAACGATCCA
TCATGGCCCGGTTTATGATGGTGTTATTTTTGTCTCAAGCTTTATAAACAAGGTTGAAATCCCT
AGTTATTATCCATGGCCCTTGACGGGCTGTTCTGAGATCTCTAAGCTCTTGCAAAAACTGGATT
TTTTCCTCGTTTCCTTGAGGCCAATACACACAAGTAAGCCACCAAGATCATCCAAGATCAGAGC
AAAACTGCACAGAAATACTGTTAACGCCAATATGTCGACCGCCAATACTTCCTATAGAGCATCG
CCAAGCTACCAAGATTCCTCCACTAACTCCTATAGCAGGTAAGTCCACAAAATCCACAAAATCT
GACCCCAACGCAACGAGGACCCTCCTAGTAATACCAGCCATCTCCATCTCCTGGAGAGACACAA
CATCCATACGAGAAGAATCAACCATAGAGCGAACTGAATCATGGTGAGCAGAGGAATTCAAACC
CCTCACATTCCATATAGGAAGGCGTTTTTGATCCATTAAAGCACAATTCAGCGACCATGAACCA
CTAGAAATTAAAGCACACATGGCCTCAACCGGATTGGCACCCATAAGCTCTACAGGGAGTGTCC
ATCCAAATAAGGCTGGTAGGGCCTCAATGTGAGATTCCGACAGAGTGCTTGAACAACTTGGCAT
AATCGTTCAGAGCTCTCTGATCAAGGCCTTTAATATCTTCAAAACTTTCTTGGTAGAGTGTGTT
GCAAGGTCAACACCCATGAATTCAATACCAACTACAGCAATCCTGCGGCTGCACTGCAGATTGG
TACCCTTCAAGTTTTGGTTGGCCCTGTTCTTGATTACAAGGGGACTGAGAGAAGCCTGTTCGGT
TGGCGGGCCATCAAATTGAGGAAAGCTTCCCTTTTTGATGATAAGGCCATCTTTTGCCCTTCAG
CTTGAATCACTTGAAGATTCTAATCAATCAACACACCGCTACCCATGCTCATGATTGCAGAAGC
AGCCGGACCTTTATCTAGATCAGGAAAACTACTTGGAGACGGGAGCTGCTACGGCCGGAGTCAC
CGAAGGGACAGTCACAGCCGTAGCTTGCTCAACCGCCATCTGCCTAATTAGCTGCTCCATTTCA
AATTATAAGTCGTTCTTTTTTTTTCTCTATATATCTAGACATATTGTATATCTAGGTGCATAGC
AAAAGCATTATACCTTAACATGCTTTGGAATGAATGGACTAGTACTCAACCAAATTACTAACTC
ATATTTTTCTTCCTCCTGCCAGAGTAAACTCAGAGTGTATATATCACCTTTTATTCATGGCACA
AGGTACAGTTCCTTTGGTAGACATTTTACAAAGGTGGAGAAACTTGTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.123168005
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b