Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os09g0407950_circ_g.1 |
| ID in PlantcircBase | osa_circ_039132 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr9: 14405671-14408976 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os09g0407950 |
| Parent gene annotation |
Similar to transducin family protein / WD-40 repeat family prote in. (Os09t0407950-01) |
| Parent gene strand | + |
| Alternative splicing | Os09g0407950_circ_g.2 Os09g0407950_circ_g.3 Os09g0407950_circ_g.4 Os09g0407950_circ_g.5 |
| Support reads | 2 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os09t0407950-01:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.221694394 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
14405734-14408973(+) 14405741-14408769(-) |
| Potential amino acid sequence |
MAYSPTASHIVIAILEDATIRSCDFATEQTLVLHSPEKKTDHVSIDTEVHLALTPLEPIVFFGF HKRMSVTVVGTVEGGRPPTKIKTDLKKPVVNLACHPRLPVLYVAYAEGLIRAYNIQTYVVHYTL QLAVDSTIKLVGAGAFGFHPTLEWIFIGDRGGTLLAWDVSTERPSMIGITQAGSQPITSVSWLP TLRLLVTISKDGALQVWKTRVIINPNRQPMETHFFEHAAIETMDITKILTLQGGEAVYPLPRIR NLAVHPKFNLAAVIFADMSGTEAAKNKAAYTREGRRQLFAVLQGARGSTEFDALTGSKIASIDL GARVVRMAYSPTASHIVIAILEDATIRSCDFATEQTLVLHSPEKKTDHVSIDTEVHLALTPLEP IVFFGFHKRMSVTVVGTVEGGRPPTKIKTDLKKPVVNLACHPRLPVLYVAYAEGLIRAYNIQTY VVHYTLQLAVDSTIKLVGAGAFGFHPTLEWIFIGDRGGTLLAWDVSTERPSMIGITQAGSQPIT SVSWLPTLRLLVTISKDGALQVWKTRVIINPNRQPMETHFFEHAAIETMDITKILTLQGGEAVY PLPRIRNLAVHPKFNLAAVIFADMSGTEAAKNKAAYTREGRRQLFAVLQGARGSTEFDALTGSK IASIDLGARVVRMAYSPTASHIVIAILEDATIRSCDFATEQTLVLHSPEKKTDHVSIDTEVHLA LTPLEPIVFFGFHKRMSVTVVGTVEGGRPPTKIKTDLKKPVVNLACHPRLPVLYVAYAEGLIRA YNIQTYVVHYTLQLAVDSTIKLVGAGAFGFHPTLEWIFIGDRGGTLLAWDVSTERPSMIGITQA GSQPITSVSWLPTLRLLVTISKDGALQVWKTRVIINPNRQPMETHFFEHAAIETMDITKILTLQ GGEAVYPLPRIRNLAVHPKFNLAAVIFADMSGTEAAKNKAAYTREGRRQLFAVLQGARGSTEFD ALTGSKIASIDLGARVVRMAYSPTASHIVIAILEDATIRSCDFATEQTLVLHSPEKKTDHVSID TEVHLALTPLEPIVFFGFHKRMSVTVVGTVEGGRPPTKIKTDLKKPVVNLACHPRLPVLYVAYA EGLIRAYNIQTYVVHYTLQLAVDSTIKLVGAGAFGFHPTLEWIFIGDRGGTLLAWDVSTERPSM IGITQAGSQPITSVSWLPTLRLLVTISKDGALQVWKTRVIINPNRQPMETHFFEHAAIETMDIT KILTLQGGEAVYPLPRIRNLAVHPKFNLAAVIFADMSGTEAAKNKAAYTREGRRQLFAVLQGAR GST(+) MPYEQHELQGQSKLSCFQSMHQIQSIPWLPEEQQKVVSSLLLCMQPCSLQLLSQTYLQKLLQPN *(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |