Detail information of Os09g0407950_circ_g.1


General Information
CircRNA Name Os09g0407950_circ_g.1
ID in PlantcircBase osa_circ_039132
Alias NA
Organism Oryza sativa
Position chr9: 14405671-14408976  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os09g0407950
Parent gene annotation Similar to transducin family protein / WD-40 repeat family prote
in. (Os09t0407950-01)
Parent gene strand +
Alternative splicing Os09g0407950_circ_g.2 Os09g0407950_circ_g.3 Os09g0407950_circ_g.4 Os09g0407950_circ_g.5
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0407950-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATATGTCTGGGACAGAAGCTGCAAAGAACAAGGCTGCATACACAAGAGAAGGGAGGAGACAAC
TTTTTGCTGTTCTTCAGGGAGCCAGGGGATCGACTGaatttgatgcattgactggaagcaagat
agcttcgattgaccttggagctcgtgttgttcgtatggcatatagccctactgctagtcacatt
gtcattgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATTTGATGCATTGACTGGAAGCAAGATAGCTTCGATTGACCTTGGAGCTCGTGTTGTTCGTAT
GGCATATAGCCCTACTGCTAGTCACATTGTCATTGCTATTCTTGAGGTAGGTTTGAATATTTCA
CTATATGAAAATACAAAACACTTTTTATCACCTAGCACTGAAATATTGGCCTTAGTGCTTCCGA
TGTTAGGTGTAGAAAGTTTATAATGGTTCAGCTTCATCAGTAAGCATGGTCTTGTGGATTTTTC
ATTATGAGCTTCCAGTATAGTGTTCAATGATATTTTATTCCAATGAGAACATTATTTTATATCA
TATTCTTAGTTCATGTGATGCTGTAGTCTGGATATGTTTAGCTTTCAATTTATGTTAATAACTC
ATGTATTTTGTTCCTTTATATATCTTGTTCAGGATGCTACAATCAGATCCTGTGATTTTGCCAC
TGAGCAGACGCTTGTGCTGCACTCACCAGAGAAAAAAACCGATCATGTTTCAATAGACACGGAA
GTTCATCTTGCATTGACACCTCTTGAGCCTATTGTATTTTTCGGTTTTCACAAAAGAATGAGTG
TGACAGGTTATTCCTCGTTACTTAGTCTCTCTCTCTCTCTCTCTCTCTTTTTTGCTTCTGAGGC
TTAAATGGTCCTCTATTTGACTATACTTTTAAAAGTTTCACTTATTTATGCTAACAACTATGTA
TTTTCCTCTCTTCCAGTTGTTGGGACTGTTGAAGGAGGGAGGCCGCCAACAAAAATAAAGACTG
ATCTTAAAAAGCCTGTTGTTAACCTGGCTTGCCATCCTCGCCTTCCTGTCCTGGTAAATACAAT
CAGAGCTTTACCTTTTGGCTGGTGATTGCACTGCAGTCCTACACAAGGTTGTCTTGTTGTTGTG
TATCTGTATTTGTCATATGTTGATGTGCAAAATTATAATTTCAGTATGTAGCTTACGCTGAAGG
ATTGATACGCGCTTATAACATCCAGACATATGTTGTTCACTACACCTTGCAACGTAAGATGCAG
TACTTTATTTTCATATATTTAAGTATGTTTAGCCTTTTGTATGACTCTTAGATTGTACTTTCCT
TAGTTGCTGTTGACAGTACAATTAAGCTTGTCGGAGCGGGTGCTTTTGGATTTCATCCAACCCT
AGAGTGGATATTTATTGGTGATAGAGGTGGCACTCTCTTGGCATGGGATGTATCAACGGAGAGA
CCAAGTATGATTGGAATGTAAGTATATTTTTACATTATATATTGTTCAGGTTGTAAAAACAAGA
CCATTTTCCTTTGTTTCTTTCTTTTCCAATGTATTCTATTATTTTGATATTCATTATCTGGACA
AGCCAGTAAGGTTTTAATTGTTGGAAATACTTTGAGGTGAGGCATTGAGTTGCTTGAAGCACCA
GTGGGGCGCATTTAACAGTTTCGATGTGGCTTTTAATAACTTGCCACTCATATGTCTATGACAT
ATGGGCCCTCATGTGTCTATGACATGTAGAGTCCAGGTAGCAAATTGTTAAATGCCACTTCTAA
GAGTGGCAAATAGTTAAATATCTCGATTAAAGTTTCACAGTGTTGACTGTTGACTATGTGCACA
AGCATTCGAGGGGCTACCTCCCTTTTTTTATTATTTAATCAAAATAGGTCTAATGGGCTTTAGG
CACTGTCTTGGGACCAAAGTTTCAGTGTGGTCCTGTGCCCCCATAGGATACATTAGCCTGCAGA
TCTATTTTGATGTACCTTCAATATAAGTTTTGATATTATACTTGCAATTCCTTGGCACGAATTT
GATTGAGAAATGTTAGAACACATATTCTTAGGCTGTGTTCGGGAGGTGAGGTTGGGAACTCACC
TTCCGCGCACGCAAAACGGAGCGACGCATTTTCTTATGATTAATTAAGTATTTACTATTTTTTT
TGAAAAATGGATTAATATGATTTTTTAAAGCAACTTTTGTATAGAAAACTTTTGCAAAAAACAA
ACCCTTTAGCAGTTTGAAAAGCGTGCGTGCGGAAACGAGGGAGGTGAGTTGGGAAATTTGGTGA
AAGAACTCAGCCTTAGTGCAGCTAACTTAATAACTCTTTGTATGTCTCTGTTTGGATGGATACT
ATTCCATGTACTTTTGATTGTTCTGGTTCTGCACTTCTGCTTGTCTTTTACCTCTTTTATTTTT
CCTGTTTCATATTATCTGATTTGTGTCTTTTACTTCTACTCAGTACACAGGCTGGTTCCCAGCC
TATCACATCTGTTTCCTGGCTTCCGACACTACGGTTACTTGTTACAATTTCAAAGGATGGGGCA
CTTCAAGTATGGAAAACACGAGTTATAATTAATCCTAACAGACAACCTATGGAAACTCATTTCT
TTGAGCATGCAGGTTAGTTTGTTTCCATGCTACTTATGCTTTTCTTCTCAAGCTGCTTTCCTCC
CTTATAATTCAGATTCAATTGCTATTTCCCTGGTTAATATGTACCTGGTTGATTTTATGCCACA
TCCTGGGGATTGCAACAGAATGGGCTGCCATGTTTAGTGGACTTCTTTGGCCCTGGGTCTTACT
GGTTGGACCTGAATGTGTTGGGACTTCAGGAGAAAGTGGTGCTGCAGGGGAAAAGCAAAACATG
GGGGAAGAGCACACATGGGAGCATTAGAGAAGACAGATAGGCAATGCCAAAAAATGTCTGATTC
AAACCAATCTTTTCTCTAGTTACCTAATTAAGGAGATAACAAACAAATAAAAATAATCAGCTTA
TATCTGAGTTGGGTTGGTTTGGCCCCTGCTGCTGTGGCCTCCTGGTGTTGGTGTAAGTGCAACC
TCCATTTGATGTTTGCCATCTGCGTCATGGGCTAATAGCATACTAGCTTCTAAGCTATTTTATT
TCATATGCTGATCACACAAGATCTTGTTTATTTAGCAGTGTTACTTGCCGATTGCATATTCTAC
CTTTTTTTCTTCTGAGAATAAGTTTTACAACTGTTTCTGTTTTAACTATGCAGCTATTGAAACA
ATGGATATCACGAAGATACTCACTCTTCAAGGTGGAGAAGCAGTGTACCCTTTACCTCGAATAA
GAAACTTGGCAGTGCACCCCAAGTTTAATTTGGCTGCAGTAATTTTTGCAGTTAGGTCGCATTA
ACTCCAGGCCATATATAAGTTTGGTACTTAATGGCAGTAATTATAGAAACAGTTTATATTTGAC
TTGCAGGATATGTCTGGGACAGAAGCTGCAAAGAACAAGGCTGCATACACAAGAGAAGGGAGGA
GACAACTTTTTGCTGTTCTTCAGGGAGCCAGGGGATCGACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.221694394
Functional Information
Coding potential Y
Potential coding position 14405734-14408973(+)
14405741-14408769(-)
Potential amino acid sequence MAYSPTASHIVIAILEDATIRSCDFATEQTLVLHSPEKKTDHVSIDTEVHLALTPLEPIVFFGF
HKRMSVTVVGTVEGGRPPTKIKTDLKKPVVNLACHPRLPVLYVAYAEGLIRAYNIQTYVVHYTL
QLAVDSTIKLVGAGAFGFHPTLEWIFIGDRGGTLLAWDVSTERPSMIGITQAGSQPITSVSWLP
TLRLLVTISKDGALQVWKTRVIINPNRQPMETHFFEHAAIETMDITKILTLQGGEAVYPLPRIR
NLAVHPKFNLAAVIFADMSGTEAAKNKAAYTREGRRQLFAVLQGARGSTEFDALTGSKIASIDL
GARVVRMAYSPTASHIVIAILEDATIRSCDFATEQTLVLHSPEKKTDHVSIDTEVHLALTPLEP
IVFFGFHKRMSVTVVGTVEGGRPPTKIKTDLKKPVVNLACHPRLPVLYVAYAEGLIRAYNIQTY
VVHYTLQLAVDSTIKLVGAGAFGFHPTLEWIFIGDRGGTLLAWDVSTERPSMIGITQAGSQPIT
SVSWLPTLRLLVTISKDGALQVWKTRVIINPNRQPMETHFFEHAAIETMDITKILTLQGGEAVY
PLPRIRNLAVHPKFNLAAVIFADMSGTEAAKNKAAYTREGRRQLFAVLQGARGSTEFDALTGSK
IASIDLGARVVRMAYSPTASHIVIAILEDATIRSCDFATEQTLVLHSPEKKTDHVSIDTEVHLA
LTPLEPIVFFGFHKRMSVTVVGTVEGGRPPTKIKTDLKKPVVNLACHPRLPVLYVAYAEGLIRA
YNIQTYVVHYTLQLAVDSTIKLVGAGAFGFHPTLEWIFIGDRGGTLLAWDVSTERPSMIGITQA
GSQPITSVSWLPTLRLLVTISKDGALQVWKTRVIINPNRQPMETHFFEHAAIETMDITKILTLQ
GGEAVYPLPRIRNLAVHPKFNLAAVIFADMSGTEAAKNKAAYTREGRRQLFAVLQGARGSTEFD
ALTGSKIASIDLGARVVRMAYSPTASHIVIAILEDATIRSCDFATEQTLVLHSPEKKTDHVSID
TEVHLALTPLEPIVFFGFHKRMSVTVVGTVEGGRPPTKIKTDLKKPVVNLACHPRLPVLYVAYA
EGLIRAYNIQTYVVHYTLQLAVDSTIKLVGAGAFGFHPTLEWIFIGDRGGTLLAWDVSTERPSM
IGITQAGSQPITSVSWLPTLRLLVTISKDGALQVWKTRVIINPNRQPMETHFFEHAAIETMDIT
KILTLQGGEAVYPLPRIRNLAVHPKFNLAAVIFADMSGTEAAKNKAAYTREGRRQLFAVLQGAR
GST(+)
MPYEQHELQGQSKLSCFQSMHQIQSIPWLPEEQQKVVSSLLLCMQPCSLQLLSQTYLQKLLQPN
*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017