Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G07220_circ_g.1 |
ID in PlantcircBase | ath_circ_001131 |
Alias | At_ciR4225 |
Organism | Arabidpsis thaliana |
Position | chr1: 2217795-2218125 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI-full |
Parent gene | AT1G07220 |
Parent gene annotation |
F10K1.7 protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 4 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G07220.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.188316717 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2217984-2217797(-) |
Potential amino acid sequence |
MKCNHSRLWGAQIMRQDWAEEAKGGFEQSKLSNQCNHRSETNLRPWEEEFGDIKQGSRRRSWYN KQPRAYWKGNPDVVSPIRLELMKCNHSRLWGAQIMRQDWAEEAKGGFEQSKLSNQCNHRSETNL RPWEEEFGDIKQGSRRRSWYNKQPRAYWKGNPDVVSPIRLELMKCNHSRLWGAQIMRQDWAEEA KGGFEQSKLSNQCNHRSETNLRPWEEEFGDIKQGSRRRSWYNKQPRAYWKGNPDVVSPIRLELM KCNHSRLWGAQIMRQDWAEEAKGGFEQSKLSNQCNH(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |