Detail information of Os03g0119500_circ_g.1


General Information
CircRNA Name Os03g0119500_circ_g.1
ID in PlantcircBase osa_circ_017623
Alias Os03circ01072/Os_ciR771
Organism Oryza sativa
Position chr3: 1052875-1055408  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene Os03g0119500
Parent gene annotation Callose synthase, Ovary expansion by affecting vascular cell pat
terning (Os03t0119500-01)
Parent gene strand +
Alternative splicing Os03g0119500_circ_g.2
Support reads 2/35
Tissues leaf and panicle/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0119500-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAAAGAAGTTGCTATATGTGTGCTTATACTACCTTATTTGGGGAGAGGCTGCTAACGTACGA
TTTCTTCCAGAAGGTTTATGCTATATATTTCATCATatgaaaagagtcatgcaaaaagatgcag
aaagaacagaggatgttgtggcttataatattattcctctagatgctttgtctacaactaatga
cattgtga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 185
Transcript exons: 1052875-1052949,1055299-1055408
ATGAAAAGAGTCATGCAAAAAGATGCAGAAAGAACAGAGGATGTTGTGGCTTATAATATTATTC
CTCTAGATGCTCATTGACGAAAGAAAAGAAGTTGCTATATGTGTGCTTATACTACCTTATTTGG
GGAGAGGCTGCTAACGTACGATTTCTTCCAGAAGGTTTATGCTATATATTTCATCAT

Transcript length: 207
Transcript exons: 1052875-1052989,1055317-1055408
ATGAAAAGAGTCATGCAAAAAGATGCAGAAAGAACAGAGGATGTTGTGGCTTATAATATTATTC
CTCTAGATGCTTTGTCTACAACTAATGACATTGTGAATTTTCCAGAGGTAAAGTTGCTATATGT
GTGCTTATACTACCTTATTTGGGGAGAGGCTGCTAACGTACGATTTCTTCCAGAAGGTTTATGC
TATATATTTCATCAT

Transcript length: 543
Transcript exons: 1052875-1052985,1053082-1053207,1054762-1054851,1055102-
1055199,1055291-1055408
ATGAAAAGAGTCATGCAAAAAGATGCAGAAAGAACAGAGGATGTTGTGGCTTATAATATTATTC
CTCTAGATGCTTTGTCTACAACTAATGACATTGTGAATTTTCCAGAGGTAAGGGCAGCTATATC
AGCTTTGCAGTACCATAGGGAACTTCCAAGGCTCCCTGCCACCTTCTCTGTCCCTGATGCTAGG
AATTCCGATATGCTGGATCTCTTGCACTGTGTATTTGGTTTTCAGAAAGACAATGTGACTAATC
AACGGGAGCATGTTGTTCACCTGTTGGCAAATGAACAGTCCCGACTGGGGAAACTACCAGGGAA
TGAACCGAAAATCGACGAGGGAGCTGTGCATGTTGTTTTCTCCAAGTCCCTTGATAACTACATC
AAATGGTGTAATTATTTGCCGCTTCCCCCTGTCTGGAACAACACCGAGTCATTGACGAAAGAAA
AGAAGTTGCTATATGTGTGCTTATACTACCTTATTTGGGGAGAGGCTGCTAACGTACGATTTCT
TCCAGAAGGTTTATGCTATATATTTCATCAT

Genomic sequence ATGAAAAGAGTCATGCAAAAAGATGCAGAAAGAACAGAGGATGTTGTGGCTTATAATATTATTC
CTCTAGATGCTTTGTCTACAACTAATGACATTGTGAATTTTCCAGAGGTAAAATTTAGAGTCGA
TCCTTTTCGTTAGTATTTACCATTTTTTAGATATAACCGTGGTCTGTGGTTGTACTACTTCCAT
GTCGTTTCATCTCAGGTAAGGGCAGCTATATCAGCTTTGCAGTACCATAGGGAACTTCCAAGGC
TCCCTGCCACCTTCTCTGTCCCTGATGCTAGGAATTCCGATATGCTGGATCTCTTGCACTGTGT
ATTTGGTTTTCAGGTCTGTACCTTTATGACGCACCTACTGTAGTAAACTATATGGATTGTGGTT
TCAACCATAACCACAATCATATTGTAGGCTTATAACTTAGTGAGTCCATTGATGATACTGCTAA
CAGAAGATATGTTTTAATCACAAACTTAAGTGAAAAAGTTTCTGTTAGTATTAGTAATCACTAC
TGTATGTTATGCTGTTACTGACTTACTATCATGCATGATTCAGTTTGTTTTAATTGTAAATATG
CTGTTCAATATGATTGAGGAAGTGCAGGTTCTCTCTTTTTTTGTAATTGAGTTTTGCCATTTGC
AAAGTACTTCCTCCGTTTCATATTATAAGACTTTCTAGCATTGTCCACATTCATATATATGTTA
ATGAATCTAGACATATATGTGTGCCTAGATTCATTAACATCTATATGAATGTGGGCAATGCTAG
AAAGTCTTATAACCTGAAATGGAGGTAGTAGTTTTATATTTGGATGCTCTGACTAACTGTTGGA
GCATAGGTACCCCTATCCCCTAGACCTAGAGTGTTGGGAGTAGGCTAGAAACCCAATGGGAAAT
GTCCAAAGAGTATACTTGGAGGATATACCGATGGAGCATGCCCTGTATTTCGTACGATATACGA
AATTATCCTTGCTTGGGCTGTGTAGTCAAGGGGCAGAAGGGGGATTTCCCCTTATGCCAACCTC
TCTATGAATATAGGATGGTCGAACCCTAGAATGGGACACTCTCTCACTTTCCACATGACTTGGC
TCTGTTCTTTCCCCTAAGTCCAAGGATACATGTACCCATCTGTTGTTTTATGTTACAACAGTAA
CCATGAAATTTATGTAGAAATGTGCAGCATATACATTTGAGATAGTTGAAACTGTACATTTCAA
CTAATTTCCTACCTGTAGTTTCTTCTTTATTTTGCTCCCTGATCTTGGATATTACATTCTGTCA
ACCAATATTATAATGTGATAGAAAACATAATGTAAGTTTCAATAAACCAGACTGTTGTAGAATG
TGGTTTCTGAGCATGCCATTCTATATGGTCAGAAATGCTAAGAGCTAATAAACATCCATGGATG
TAAACTCACATTTAGTTCAAGATTATGACCAAGATTTTATTAGACTGTTGAAGATGAGGGGAAA
AGGAAAAAGAAAGAACATTTGCCGTAATTTCCTTGATCTTGATATTTTTCTTTTATTTTGTTCT
CTGACTTGGACAATACATTCCAGCAAGCATTTAATTTTGATATAAAAAGAAAACATAATGTAGA
GCGTTCTATATGGTCAGAAATGCTAAGAAGTAATAAAGATCCATGGATGTAAACAGCATCTAGT
TAAAAATTATGATTAATATTACAGACGGTTGAAAATGAGGGGAAAAAGACAATAGATGTCAGCC
TGTGTTATTCTGAAAATATTTAAGAAGGAAATGCGTCATGGGAGACAACCTTTTAGTGTGGATC
TGCAGTTACAACTTCCTGGGTCATTCTTGATACATGCTGCAGTATTTCAGAATCTTGTTGCCTT
CATGGAACTGAAATGTCACAATTGGTTGCAGAAAGACAATGTGACTAATCAACGGGAGCATGTT
GTTCACCTGTTGGCAAATGAACAGTCCCGACTGGGGAAACTACCAGGGAATGAACCGGTATGCA
TACTTTGCACCCTAATTTTTTATGTCGTACAATATTTTTTTTGGGGGTAGAATTGGTTCCATGG
CATAGAGTGATCCCTATTCTAGATATTTACTGGCAAAAGTTCTGGGTACTTTTTAATACCACTG
AAATATTGCACCGTTTAATACCAGGCCTGGTGCAAAGAGTACTCAATTGCATGTTGCTTTATGT
TGTTAATATTTTCATCCTTAGTTCGTTAGCATTGTTGTTATTTGTTGGCAGAAAATCGACGAGG
GAGCTGTGCATGTTGTTTTCTCCAAGTCCCTTGATAACTACATCAAATGGTGTAATTATTTGCC
GCTTCCCCCTGTCTGGAACAAGTATGATTTGTCATGTTGATCAACATATTTAATTTCTTATTCC
TGTCTATATCTTATTTATCACCAAGAGATTTACCTGATTTTCTCTTAGCACCGAGTCATTGACG
AAAGAAAAGAAGTTGCTATATGTGTGCTTATACTACCTTATTTGGGGAGAGGCTGCTAACGTAC
GATTTCTTCCAGAAGGTTTATGCTATATATTTCATCAT
Conservation Information
Conserved circRNAs osi_circ_012925
PMCS 0.459130071
Functional Information
Coding potential Y
Potential coding position 1052876-1055405(+)
1055327-1052875(+)
1055391-1052927(+)
Potential amino acid sequence MKRVMQKDAERTEDVVAYNIIPLDALSTTNDIVNFPEVRAAISALQYHRELPRLPATFSVPDAR
NSDMLDLLHCVFGFQKDNVTNQREHVVHLLANEQSRLGKLPGNEPKIDEGAVHVVFSKSLDNYI
KWCNYLPLPPVWNNTESLTKEKKLLYVCLYYLIWGEAANVRFLPEGLCYIFHHMKRVMQKDAER
TEDVVAYNIIPLDALSTTNDIVNFPEVRAAISALQYHRELPRLPATFSVPDARNSDMLDLLHCV
FGFQKDNVTNQREHVVHLLANEQSRLGKLPGNEPKIDEGAVHVVFSKSLDNYIKWCNYLPLPPV
WNNTESLTKEKKLLYVCLYYLIWGEAANVRFLPEGLCYIFHHMKRVMQKDAERTEDVVAYNIIP
LDALSTTNDIVNFPEVRAAISALQYHRELPRLPATFSVPDARNSDMLDLLHCVFGFQKDNVTNQ
REHVVHLLANEQSRLGKLPGNEPKIDEGAVHVVFSKSLDNYIKWCNYLPLPPVWNNTESLTKEK
KLLYVCLYYLIWGEAANVRFLPEGLCYIFHHMKRVMQKDAERTEDVVAYNIIPLDALSTTNDIV
NFPEVRAAISALQYHRELPRLPATFSVPDARNSDMLDLLHCVFGFQKDNVTNQREHVVHLLANE
QSRLGKLPGNEPKIDEGAVHVVFSKSLDNYIKWCNYLPLPPVWNNTESLTKEKKLLYVCLYYLI
WGEAANVRFLPEGLCYIFHH(+)
MCAYTTLFGERLLTYDFFQKVYAIYFII*(+)
MLYISSYEKSHAKRCRKNRGCCGL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015