Detail information of AT1G26620_circ_g.1


General Information
CircRNA Name AT1G26620_circ_g.1
ID in PlantcircBase ath_circ_004420
Alias 1:9195870-9198769
Organism Arabidpsis thaliana
Position chr1: 9195870-9198769  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G26620
Parent gene annotation T-box transcription factor, putative (DUF863)
Parent gene strand -
Alternative splicing 1_circ_ag.2 AT1G26460_circ_g.1 AT1G26460_circ_g.2 AT1G26470_circ_g.1 AT1G26530_circ_g.1 AT1G26530_circ_g.2 AT1G26550_circ_g.1 AT1G26550_circ_g.2 AT1G26550_circ_g.3 AT1G26558_circ_g.1 AT1G26560_circ_g.1 AT1G26580_circ_g.1 AT1G26620_circ_g.2 AT1G26630_circ_g.1 AT1G26630_circ_g.2 AT1G26660_circ_g.1 AT1G26660_circ_g.2 AT1G26660_circ_g.3 AT1G26660_circ_g.4 AT1G26665_circ_g.1 AT1G26665_circ_g.2 AT1G26690_circ_g.1 AT1G26730_circ_g.1 AT1G26730_circ_g.2 AT1G26730_circ_g.3 AT1G26730_circ_g.4 AT1G26761_circ_g.1 AT1G26770_circ_g.1 AT1G26770_circ_g.2 AT1G26830_circ_g.1 AT1G26830_circ_g.2 AT1G26850_circ_g.1 AT1G26850_circ_g.2 AT1G26850_circ_g.3 AT1G26850_circ_g.4 AT1G26880_circ_g.1 AT1G26880_circ_g.2 AT1G26940_circ_g.1 AT1G26940_circ_g.2 AT1G26940_circ_g.3 AT1G27000_circ_g.1 AT1G27000_circ_g.2 AT1G27000_circ_g.3 AT1G27000_circ_g.4 AT1G27000_circ_g.5 AT1G27000_circ_g.6 AT1G27000_circ_g.7 AT1G27000_circ_g.8 AT1G27030_circ_g.1 AT1G27030_circ_g.2 AT1G27030_circ_g.3 AT1G27030_circ_g.4 AT1G27030_circ_g.5 AT1G27030_circ_g.6 AT1G27030_circ_g.7 AT1G27030_circ_g.8 AT1G27030_circ_g.9 AT1G27045_circ_g.1 AT1G27090_circ_g.1 AT1G27090_circ_g.2 AT1G27090_circ_g.3 AT1G27090_circ_g.4 AT1G27090_circ_g.5 AT1G27090_circ_g.6 AT1G27090_circ_g.7 AT1G27090_circ_g.8 AT1G27100_circ_g.1 AT1G27100_circ_g.2 AT1G27100_circ_g.3 AT1G27150_circ_g.1 AT1G27150_circ_g.2 AT1G27150_circ_g.3 1_circ_ag.4 1_circ_ag.5 AT1G27180_circ_g.1 AT1G27190_circ_g.1 AT1G27210_circ_g.1 AT1G27290_circ_g.1 AT1G27290_circ_g.2 AT1G27310_circ_g.1 AT1G27310_circ_g.2
Support reads 2
Tissues flower
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered AT1G26620.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATCTTTCTCGTATCCAGAGTATGATGACGAATCCGCTGCATCTCTCATTGCGAAACACGTCT
AATATCGCCGCCCATACGTTGCATCTCCACGATTCActgcaggagggcacctttgtctcctcgg
tcttcttgttgcttgtccccatcctgagagcttactgtcttcaagtcctcccactgatacgctc
tcattcat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 237
Transcript exons: 9195870-9196047,9198711-9198769
CTGCAGGAGGGCACCTTTGTCTCCTCGGTCTTCTTGTTGCTTGTCCCCATCCTGAGAGCTTACT
GTCTTCAAGTCCTCCCACTGATACGCTCTCATTCATTGGCTGCGCCATTGACGGGCATAATGGA
GCTTGGTTTATGTTAGTGACATTTCGTTTTCTTTTTGAGTTCCGTCGAACATCTCTCATTGCGA
AACACGTCTAATATCGCCGCCCATACGTTGCATCTCCACGATTCA

Genomic sequence CTGCAGGAGGGCACCTTTGTCTCCTCGGTCTTCTTGTTGCTTGTCCCCATCCTGAGAGCTTACT
GTCTTCAAGTCCTCCCACTGATACGCTCTCATTCATTGGCTGCGCCATTGACGGGCATAATGGA
GCTTGGTTTATGTTAGTGACATTTCGTTTTCTTTTTGAGTTCCGTCGAACAGCCAATCCAGAAC
TCCAAGTGTAGTCTCCGGTTTTCATCAGTCCCCCAAACATTTGGATATCTTCAGTGACTTCATG
CCTCGACAGAGAAGAGAGACCAGGTAGAGTATCCCTTTGGAAATCCCGCTTTGGTCTTCCTCGT
CTTGCTTGTCCTCTTCTTGGCTTGTTAATACATGTATCTTCGAATTTCAGATTCTCTGGGACTA
ATGGCTCTGGCATGTAGTCTTCCTCCTTTGTCTCCTGTATATTCAGGGTCATGGCTTCAAAGTA
ATCAATCTCCCCAGAAGAATAGTCTTCCCTGTTACCTTCAAAGTCTGTGGCTTCTGGAGAACCA
TCAATCTTTCTTTCTAACTCATCACCGCAAGAAGTGATTATTTCTGCAAACCAAGAGAGCGGGC
TTTTTGAAGCCGCATCAGTTGAAGAGGAAGCTGCGTCATCAGGATGGCGTTGGTGACCAGCCAT
TGAGATGGCAACTATTGCTTCTGCTGCTACCTTGATGAGTTCATTCATAGAGTTTCCGTCTTGG
CCTTGCATCATTCTCCAAGTTTCTTCATTTGTTTTGTCCTGTGAGTTATCTCCTTCTTCTTCAC
TCTCGAGAGTAGGGGGAGCTTCCAAATCTATCCAAGTTCTTGCTTTTGTTTTCACACTCAGACT
GGAAAGGAAGCCGGAATCTTCGTCATCCTCATTAGCACATGAATTCAGATCAATGTAGTGTCTG
AAGTTGGCAGCTTTTTTCCCTTCTTTCTTGTCTACATAGTAGGCTTTAGCACCATGCTGGTCAA
CAGAAACCGAGGCATCACATGGCAGGTTGATATCAAGGTCTCGCTTTACCAAGTGATTTACTTC
CTTGTGTTGATTAGCAATCCATAAGGAATGAGGGATAAGGGGCGTACGCTCCTGCTTGCAAACA
AATTGCTTCCCAAAGATTGGGCTCCCAATAATTTTAGTACTACTCTGAGAGTTGTTCGTTTCAA
CTCTTCCCATGTTTGCATTATTAGAGTATGAAGCAGATCGCAAACCCTTCAGAACAGAAGCACA
AGTCAAGTCGTCCCCAGCGTCAGTTCCATCCATGAATTGATTTGTCGAAGCATTCAGATCAAAG
AAGCCATTGGACATTCCACTTCTGTAAGGGGGCTGAGGTTTTAGCCAGGGCAACCCAGCTGAGC
ATTCCTGCCTTTTTGGCCCTTGAAGATTTACAAAACTGTGGCTGTTCGCTACCTCGCCTATGGA
AGCATTTGGTTTAAAGCCGGTTGATGGGAAATTATAGAAAGACTGCTTTGACCCTGAAGAGAAT
CCTTGATAAAGCCCATTAGAGACATGGCTTCTATTCTCAAAACTCAAATCTGGTCTTGCATGTG
TGTCAAAATTCATGTAGGGATTCGTTTGAACTGGATAAGATTTCTGATTTGAGCTGGTCATAGT
CCTCCCGGATGAAGACCAATGGGTCAATGGTTTGAAAAATTCAGGGCGGTAGTCATTGACTGAT
CTTGGAGCAGTAGATGCCACACTTGATTCAACGTAGCTATCATAAGAAACTTGAGGAGTCTTTG
AGCGAACTTCTAGCTCACGATGTGCTCTTTCCCCGGAAAATTTGACCTTGCTGTGATCAGTTGT
AGGATAGCTCTGAGGTTGAAATGCATTGTTAGAAAGTACTTGTCCTGAATGAGAAGGCAGATGC
ACCTGATCTCTCTGAGTGCTCCTATCTTGCCCTATTAACACAGCCACAAAAAAAACATTTGAGA
AATAGAAGATAGGCAGAAATGGTAACATATTACTGAATCAGCACAAAATTCAAAACCATTCTAT
GAGCGATCACATATTTTGCGTTCATTAAATATACTGAGCAGGAAAGACACTTAAATGTAAGAGC
ATGTAACTAGCCACTCATTAAGGAAAAAAAATCACCTGCTTCAAGGACCATCCATCCATTTTGA
GTTCGATTTTTCTCCAACCACTGACCTTGAACATGAGCATTGTTTCTCCCATAATGAGAATACA
TATCCCTAGACAGAGCAGCAGGTTCTGAATCTTGCCCTTTGAGTGGCTCATTCAAGTCAGCTAA
GCCATTTGAGTTCTTCACATCCAAGCAAGATCCTGAAGGATAGCTCCGATGAGAAGCATCCCCT
CTTCCTGATTTTAACTGGTTGTATGGAGGGAAGCTTGTATTCTCACCGGTGTTAGTAGTTTCAT
CAGTATCAAGATACTCATCGGCTGGAAGTTGAAGATCAATCATTCTTCTCCTCCCCTTCACATC
TCTACCCTCGGACGCGTCCCCATTTGAACTACCACCATTTTGCAAACGACCGTTGGACGCTTGT
GTGCTGCTCCCTTCTCCACATGTTGAGTTTGGTAAAAGAAACCCATGTAACTTCCTCTTACTTT
CATTTTCAGATGTATGATGATCACTCACGTTCATAACTTCATTCAAGTTCTTTCCTTTTACTTC
CTCAACCAAATTCTTCTGTACTCTATACAAACGGTGAAGCTCATGCACCTACATATCAATACAA
AACAAATCAAAACCATATAGACACGTAAATGAAACCATATAGAGAGCAATGTAAGCATCAAGAT
ACCTGATTCTTGAAAACAGCTTCGTGCTCAAGCATTGTATGTTTCATGAAATCTTTCTCGTATC
CAGAGTATGATGACGAATCCGCTGCATCTCTCATTGCGAAACACGTCTAATATCGCCGCCCATA
CGTTGCATCTCCACGATTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.255284779
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR857
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020