Detail information of Zm00001d034245_circ_g.6


General Information
CircRNA Name Zm00001d034245_circ_g.6
ID in PlantcircBase zma_circ_000900
Alias circ286
Organism Zea mays
Position chr1: 287803760-287808245  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d034245
Parent gene annotation Cytosolic purine 5-nucleotidase
Parent gene strand -
Alternative splicing Zm00001d034245_circ_g.1 Zm00001d034245_circ_g.2 Zm00001d034245_circ_g.3 Zm00001d034245_circ_g.4 Zm00001d034245_circ_g.5 Zm00001d034245_circ_g.7
Support reads 4
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d034245_T010:5
Zm00001d034245_T004:5
Zm00001d034245_T005:5
Zm00001d034245_T003:5
Zm00001d034245_T006:5
Zm00001d034245_T007:5
Zm00001d034245_T014:6
Zm00001d034245_T002:6
Zm00001d034245_T013:6
Zm00001d034245_T015:6
Zm00001d034245_T016:1
Zm00001d034245_T012:6
Zm00001d034245_T011:6
Zm00001d034245_T009:6
Zm00001d034245_T008:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTTACCTGGCAGGATCCTTCGCAACCATCCGCTTTAGAGTTCCATCACGATGACACAAGTCA
ACCGCAGACCTCACATCTCTGTACATAAGTGGATAGcctgtgaactagaagcaacagaaagtaa
tctgtggagatgaccaacattgcccccctggaaagatatagcaataaataggatataacaatag
tataaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGAACTAGAAGCAACAGAAAGTAATCTGTGGAGATGACCAACATTGCCCCCCTGGAAAGA
TATAGCAATAAATAGGATATAACAATAGTATAAAGTTGCATTTACATGATATATTATATATCAG
AAAAATAAGTACCTGATAAACTTTCTGAACTGGTGTTGAGTGTTGATGACTTGATCTTGGGCTT
CCGATCTTCACGAAGTATTGCATATATTTTAGGGAAAAACATATGACATGAAGATAGATTAGAA
TTGATAAATTTACTAGCCTGAATATCAGCATTCAGAAGTTTTCCAGAATCAGGCTCAACTTCAA
ACAATCCTGCACGGTTATCATCATGGAAGAAACTTGGCTTCGAACTAAAAGAAAGTTCAGTAAG
GATTGGCTAAGTTGAGGGAGCTGATACTTTCAATATTATAAATAGCAACAAAAGAATCAGGAAT
CAGATAACATAAAATACTAACCTGCCTGTTATTACAATATCAAAATATTGAAGCCACTTGTGAT
TGAGACCAGAGCCTACACCTGAAGTGTATGGCCCACAAAGGTAGTTCATGACAACATCGGTGTA
GTCCCACAAACTGCATGAATGAGTACTTGCCTAAATAATAAATATAGAGTGTAGCAAGATGCTC
GAAAATGTAAAATGCATCTAGATGAAAAGCCTTAGTTTAAACAAATGGGTTTGTTTCAGGAGAA
ACTAGAAAGGACACATTACAGAAATTTGTCATCACACGTCTCAAGATAACTCATAAAGGCACCA
CCAGCCACATACCTATTTGTCACTAAGAATGTTGAGCGTCCAGATTTCCTGATCATTTCAAGCA
TTGGTACAATTGCCAAGTCCTCATTGATGTACCTGCAATCGTTTGTTCAATTTACACAAATTAG
CAGGATTTTCTATAACATAATTATAACCACAAGTATATATATATAGGCTATGGGCCATGTTTGG
GCTCAGAGACAAGCCTGTCAGGCGGCCCAGGCCCGGCACGATTAAGGACGACCCATTTAGCCCG
TTACCGAACCCGGTTAGCTCAAATAGACCAGCACGGCCCAGCCCTGTCTGTTATAGGCCCATTT
CCTAATTTCCCATATGGCCAAATTCCAGCAGCCGTGTGAGAGGGAGCGGCCCAGGTGGCCTCCA
CGTTCCGCCTCCCAACTAGGCCCAGTCCGCACTCAGCACCCCCCCCCAAAACCTAACCTGCTCA
CAAACCCTAAATCAGCCCCTCACTAGTCTCGGACTCTCCATCTCCCACCCTCACCAGCCTGCCC
CCAAGGAACGGCAGCACCGACGACGGCGCAGGCACACGCCGCACTGCGCAGCTAGCCAGCCGCT
TCCTCCCTCCCCCATCCGTCCATCGGCACTCACTCGTCACCTCGTCCGACCGCATACGCAAATA
AGTCTATGGTAAGTGAGTCTATGCCGCTATGATAATGGCGTAAGGCTCTCATGTCTCAGCCATC
GCGCGTCACGAGCGCAAGCAGCTGCGCGCACCGGACACATCTCAGGAACGACGATGAAGTCTAA
CACCAGAACATGTGGAGATGTTGTCCCTCACCAAAGATTGGGAGCAAGCTGCAGCTCGACAGCA
ACAGTGTGTAGAACAAGGAACTTGAAGACCTAATGGCAAACATGTATCTTGATGCACAAGAGGA
CAGTTCTGTTTCTGTTAGTCGTGGTAATGAACATGAAGTAGTGAACCATTAGATCACAAAAAGA
GCTAGGTTGTACTCTGATTTCCTTTAGGGTTTTGTCCCCATGTAGTTGAAATGGGGTTTTACCT
TAAGGCTTTTTAACAAGGCAACCATTGCAAACAGCTCTTTTTAAAGTATGGTGATCTATTTTTA
TCATTGTATGAACTTATGGGCATGGCTTGCTGTTATGAACTATGTACTTATGGGCATGTGCATG
TCTGTGTGATTGTATGGGCACTGCTGCTTTGACTGTATGATCATGGAGGTCTGTATGAACCATT
AGTTTGTTGTTTGCACTGCTGCTTATGGGCATGGGCGCATGGCTTGCTGTTATGAACTGCTTTC
TGTACGAACCATTAGTTTGTTGTTTGCACTATACTGTATATGGTAGTTGTACTGTATATGCAGT
AGCGGATCTAGACAAAACAGTCATTGGTGTCATCTCCATTAAATTATAGTATTATCAACTCATT
TAATCACTAATAAGCATACATTTTAATAGAGATTATTAAAATTCATTGGTGTCACATGACACCA
CAAAAGTACCCTGGATCCGCCCCTGTGTATATGTAGCGAGCCTAGGCCAGCACGACACTGTAGC
CCGGGCCGTCGGTTAAATGTATTGGTCTCGTGCTTGGGCTCATGCTTAGGCCCACGTGCCGGCA
CGGCTAGACACATAACAGTGCCATGCCTCGGCCTGACTAAGTTGGCCTGGCCCGTGTCGGGTTC
GGGTCGTGCTGACCCGGCACGGCCCATTGGCCATGTATATATATAGCACTATAAAAGTGGAATG
GCATAATTAGCACATTAGCAGGATCCACTAGAACATAAAAGTGGAAATAACACATGGATGCCAA
TTTGCATGTGGACCAAAATAGTCGTATAGAAAAAGTATGTCTATATGAATAGAGATCGGATTTG
GCGCCCACAGGGGTGGGAGCCCTCCTTATATGTACCCTTCATTTCCATCGGCCAGATATTCCTA
AGGATGAATGAAAACATAGCTATCTTGACCCACACGCCACTCACCCATGCGCTCTTCTTGGCAC
CACCGTCACTTCTTCGCACCATGCCACTCCTCTTGGCTCTCGCTATCGCATGACATGGGTCCAT
TGCCTTCTTGCGCCACCACTTCCTTGTGTCACCACACTCCCCCCTATGTCACTCCTTCTAACTC
TAGATGCCACATCACAACTACCGAGTTATTGATCATGATTATCAGTTATCCTTGATCCCAACTT
TTGTTATGTCCAAGATCGGCTCATGGGTCACCTGGTTGGTACTGGCCCTTGTCGTTATAACTCT
CAGCATCTCTAAGATGCTTGAATAGATTTGCCCTCCTCCTTCCACTGCTTCTATTGGTCTTGCT
AGGTCCATTTTGGTTATGCTGACTTCGTATTTTGCTTAGTGGCATCATCATCTAGTCCATATTT
GTGACTCTGATCACCCACTTTAATTAGTCATGGTCATGAGACTTTTGGGATGAAGCTGTTTCTA
CTACCACTTACTTGACTAACATTCAGCCTTCCTCGACTCTTTAAGGAGGGATTACTTTTGAGTG
TCTTTGTGGCAAGATGTCTGACTATTCAAGCCTTCGTCAGTTTGGCTATGTCTGCTATATGCTG
CTCCCACCTTGTGAGTGCGCTAAGTTGACCGCTCAGTCGGTTGAGTGTGTTTTTCTCGAGTATA
GTGTTTTTTTCTCGGTTGAGTATAAGGGATATCTTTGTCGAGATCCAATTGTTTGGCAGAAGAA
AATCTATCCTACTTTTGATGATTCATCAACATCCTTGGTTGGTACCCTTGTTTCTGTTCTTCCT
CGATGCTCCTGCTACTACAATACCAACCTCACTTAGAGCAGTCCTTGACAAAGTCCTTAGTCCT
AACCTACTTCAGTGGTACCTCCCTTAGTGTGTTTCTAGACCAGAGCTCAAAATAGGTTTTATCT
CTCCAAACTTAGTGTGTTTGATCCACCTTGAGTTTGAGGGGGGTAGATGCTTATACATGGCGAC
AGAGGACCCAATATGGCGCACTATGGCTCGTGCCATACCTCGGCCCAGCCCACCAAATTCGAAG
GCGCGCTCCTTTGTTCCCTTGGCCCAACCTCGGAGCTCTGGTGCTCCGTGCCTGGGGCCGCCGC
TCCGCCAGCGCACGCGTTGCGTGGCCTCGCTGTCTCCACGCCCCGACACTCATACCTCCACATC
GCGCATAGCTCCAAAAATCGCAGGCCCCCACGCCCACCACACGCGGTAGCCGGTGCCTCGGCGG
TGGTGCATCCCCCCGCAGCGACCCCTCCGGTCTCTGTCTCTCCATGCCGAACGGCAATCACACC
GTGAGTTTGCAATAACTTTTTTTTGCGTCCGCCAATTCCTATACATGTGTCCTCGTTAGATGTC
TATGCATGTGTCCTTGTTGTATTTAGTCTCATATATAGAATCCTTGTTCTACACAATCTCTATC
GTGTATCAGTGCATATATTCAGGCCTTGAATATAGTGCAATTCATAACATGAGGCGAGGAGAAA
GAAACATCATCAAATGGTTGCACCAAAACAATTACAGGCAACAGCCTAGATAGCAAGAGCGCTA
GCCCCATGGGTGCCAAACAATTTTCGTTATGAATAATATCCAGCATTGTAATTGTATCATATGA
TTGGTGTTACATATTTAATCATAAATAGAAAACTGAGTTACCTGGCAGGATCCTTCGCAACCAT
CCGCTTTAGAGTTCCATCACGATGACACAAGTCAACCGCAGACCTCACATCTCTGTACATAAGT
GGATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.002043394
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b