Detail information of Zm00001d028238_circ_g.5


General Information
CircRNA Name Zm00001d028238_circ_g.5
ID in PlantcircBase zma_circ_006440
Alias zma_circ_0000535
Organism Zea mays
Position chr1: 27592119-27596720  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d028238
Parent gene annotation CCAAT-binding factor
Parent gene strand -
Alternative splicing Zm00001d028238_circ_g.1 Zm00001d028238_circ_g.2 Zm00001d028238_circ_g.3 Zm00001d028238_circ_g.4
Support reads NA
Tissues leaf, root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Zm00001d028238_T007:3
Zm00001d028238_T001:3
Zm00001d028238_T006:3
Zm00001d028238_T008:4
Zm00001d028238_T005:3
Zm00001d028238_T004:3
Zm00001d028238_T011:3
Zm00001d028238_T003:3
Zm00001d028238_T002:3
Zm00001d028238_T012:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGTTTTAAGCAGTCCTCCCAATGCCAGAAGAGCAGAAGTGAGTACCCATCTTTTGTTTCAGG
TAAAATGTCTAGCGGGCGTTGGATAAGACTTTTCAGtttgttaacaagagctgtgagcaaacga
cgttcctgttctgacttacttttcaaaagcatgaaaactgtctgcagtaaacaaaaatataaaa
taggcatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTGTTAACAAGAGCTGTGAGCAAACGACGTTCCTGTTCTGACTTACTTTTCAAAAGCATGAAA
ACTGTCTGCAGTAAACAAAAATATAAAATAGGCATGATCAAAATCACATTCATCATTACATAAA
TTACGTAAACTACGGAGAAAATGGACATGTTATGTAGGGCCACATACTTGAATGTTGCAAGAAT
AAGAGACAGGCAGGAACATCAGCTTGATCAAGAGAATTGGCACAGAAAAAGAAAGTGCCATGTG
TGTTTTACAGCTTGCCATTTACACTCACTTCGAAGTTATATCATAAAGTGTTGTCAGCGATTGA
GTCATTCAATTGTAAGCTCCTCTAAGGGAGCAAGGATAAAGGAATAAGGCAGGCAAGAATTCAG
TCCTAATCAGCCTCCATCTCTCTCTCTCAATGTGCCATGTTTCTATAGGCTCCAGGGACACGAG
GTCAGCAAGGCAAGGAACTTGCTGTTCTGTCAAGCTTCACCACTGCCACCACACCTCTACCGCC
TAGCGCCCACAACAGAAAAGGCTAGAGCATTTGCATCAAGGTCTCAAAATTGCTATAGCACATG
CCATATTATGTTGTTTGCCCCTTGGCAGATTAGTAAGTTAAGATAATGAAGTATTTTCATTACT
ATCTTCTACATATGGTTTGTTATGAGATTAGATTTTTTTTTCTCGAACGCGCAGGAGAACTGCG
CATCATTATATTAAAAGAGAGAAAGGTCCGAAGTGGACCACAGTACAATGCCATAACAGGCAAA
AAAACAAAGGAAAAACAGACAAAACCTATTCTTATCTCCAACTTTCACAGCATTAGGCACTAGA
AAGACAGCCAGGAGGCCAAGACTCTCAATCTGCTTCGCACCAGCCATACACCAGCACTCCACCT
CATCCATAAGAAGCCTCTGAATGGTGCTCAAAGAAGGGCTGGCACCATCAAATACCGCCCTATT
GCGATGCAGCCATAAACACCAGGCCCCCTGGATGCTTCGGAGACAAAGTACACCTCTCTATATA
AAGAGAGGATGTTATCAGGCATCAGCATGCAAATCGATGGACAAGCCTCCGCAGTATTGCTTCT
AATGTTGTTCAAGCAGGCTGTTGTGCTTGTGGCCAACAAGCCATCCACCCCATAGTGATGGTGT
TACATGTAGGGGAAATCATCATGAATCCCAAACAGATCCAATGAACTCCAGATGGTTCCCAAAA
GTTGCAGACAGAATATGCAATTAAGATTTATATAACAAAAGAAGTCCATTGGATTTTATATTTA
CCACAAAGTACTGCAACGACAAATAAAGTTTCTGAAAATGGCTTGCTCCAACAATATACATTGT
CTGGTTAGAAAATGTAGTTCAGAGTTCAAACTTTTGTTTTGTATAGGCTATTAAGCTGGTGATA
ATTTTGATGGGTGTAAAATGGTGGGGCCCAGCCTCTTGAGCATGTGCCAGATTAAAGATAAGGT
TATTAGCTTGTTCTATCCCTAAATTGAGTGAGTCTTACTGTCATAAAGAGACCATAGGCTAATT
TCGCTTAATTGAAAAGGAACACAAGTCCTTTTTATTTTCTCTGCCACCCACACCAGTGCAACCC
CGCAGTCCTACAACTTCCTACAGCAGGCTATCCCCAGCTGCATATACATTAATAAAAACATGTC
CGTTCATGTCAAGAAAAATATCTACCTAATATTAAAGAATAAAAAGTGTTTCTTTCAACCACTT
TTTGATTCCCAAAATAACCCCACCACCACCTACCGGTCCCTCTCATGCTGATCGTCATAGCCCA
AAACAGACTTCGTCCGTAGACTTGTCTTGCTCTTGTAAGTTGCACATATTGCCATGTCCGACTC
TAATTAAATAAACAATTTGCTTTCCTGCTTGAAGATGAACGTGTCACATCTAGACTCAACAAAC
ATCATAGACGTTTCTTTCTTTATTGGTGCTTATTGACTCGGTCACGTAAACTTCTCCTGTGTAT
ACTAAACCTTCCTTTCTCTCCTCTTGTTTGTGGTTTCCATGTATCTTCCTGATGTCATCATCTG
TCATACTGAACAGAAAAAAGGCACAATGGTTTGCATTGGCTACAATCATGTGTGCATGATATAA
AATATATAGAAGGAATGTGAAGGGAGAGAAGATTGAATTGGTCAGCATGCAGATCGCTCAGAAC
AGCGGGGCAAGATGGCAGCGGCGATCGACGTGATCGGCCATGGCGATGCTCTGCCGCAGCCACA
GGTTGAGAGGGATGGACGGATTCGCGACAGTGAGTGACCATCGTCCCTAACCCGGTAACTCCTG
TTCATCCTAGCTTGCAACTAATCAATCTAATGTGTCTATTTGTTTCAAAAAAACTATTAATTTG
TCCCAATTAACCAGAATGCATGTATGGTGCAGGCATGTTGACGTTTCTCAGCTGAGGCGTGTAG
GGACCCAAAATAAATGGCTCCCGACGAAGTGATGACAAAACAAATGGCTCCCGACGAAGTGGCT
TAAAATTTGGATATGAGGGAGTAGAAACCAAGCCTAAGTGCTTTAAATTCATATATGAAATGTA
CGGCAATTTCCATGCACCTTTAATTCATATTATAGAACATCTAAAAATGCATCTCTGTTTTCAT
AGAACTACTACCTTACGTTCAATCTTCCAAGTTTGTCAACTAGTTAAAGAAGGGACAGACCCAG
TGCCAGAGACTCCCAATGAGTGAGGTCTAGAGAAGGGATAATAAGCCGAGGCAAGACTTCCCCA
TAAATGCGGAGAGACTGCTTCGAACCCACGACATGGTGACTCAGTCTCGCACCACTGCACCAGG
CATGCCCTTCTTAAAGTATATGCACCGATAATGATATGCAACAACAATGTTTTCAAGTCGTCTA
GTCGAGCCTAGTCATTTAGCTACCGACCAGTTGACTAGTCACAATTAGTCGTCGACCAGATCAA
CTAATCGAGCCTAGTCAAGCTAGCTGTCCATATGTTTCTGGAGATATATAGTATACACAATACA
ACAAGCATCAAGATGGTGACTTATCTGTGTGTTTGCTGCTGAAATAACAAAGAATTTAAGTAAT
ACAGTGATGGCTCTGTCTTCGGGCTAGGGGTGGCACTCCGTCTTCGGCGGAGGCGGGCGGCGGC
GTCCTTGTGCTGCTGCGGTGGCCGCGGCCTTGTGCGATGTTGGCGGTTGTACGGCCTTGAGTAC
CGGTAGCGGCTACGCTCTTGGCAAAGGACTGCAGGAGCACGAGTGGGTGCTCGGCGTCCAATGC
TCCAAGCTTTTGTCTTGTGCCTGTTGGCCAACCCTAGAAGCCCACAGATGCAGCAGCCTAGCTC
CAAAAGCCCATCTACAACGACACGTCTAATCTAGTCATCCCAGTTCAAATCGAACGACTAGTCG
TGACTAATCGTCGACTAATCGGACAACTAGTTTTCGAGTCGAACTAATCGCATTGGTGGGTATG
GTCGGATGTAGTCTAACAATTAGGCTGACAAATCACGATTAGTCGGACGACTTGAAAACATTGT
GCATCACTCCTGCGTTTTCTTGCAATTGTACATGCACCACAAGTTCCCCAATCAACTTTGTCAT
ATGGTATGCTGAAATATAGTTTTACCTAAAGACAACTTACAGTACATAGTCACAGAAAACGGGG
TTCAAGGCATCGACCTCCGTCTAGAAGTGTCATCCCCGACCCGAGTACCAAGGGTCATTTTCAA
CCCACCCATGTAAAAACCTGTCTCAAGTAGTGTACCAAGTTCCTTGACCCTGTTTCTCATCCCC
ATCGACCCGTGAACTATGTAACTGTGGTTACAGTGTCAAAGTAAGTTTTCACAAAGACAAAAGA
TTACACAACTGGAGCTAACCTTCATTGCTTTGTCCTTAAGATTTGGCAGCATATCTTTTACCGC
ATCCTCCAATGCCATAACAAACCTTTCGTATCTGCAATAATATGAATATTAGAGTTGAAACCGA
GCATGTTAATGATAAAATCAACAAGAACATAAAAGATAATTTTATCTTGATGCATCCAAAAGTT
CATGCAGGTGAATGTCTAGTATATTCAATATTTGGTTCCACTGAGGCCACATATTCATAGTATA
AGTTACCAATTAATCCAGTTAAATATTTTCTTGTTCAAAGAATACCAAAAGTATCTTGGTACAT
TAGAACAGAACACCAAAACACCAATGAAGGGGGCATGCATATCACTGGCAAATAAGTTTCGAAA
ACGTATATAGAAGGGCAACATCTTCATTGCATAAGTGTTAAACTAAGCCACATTTTTCCTACAA
AATGTTTTTAAGCAGAAAACAGATGCTAAACTGCATATTTCTTTCTGGTGATGTATATGTTACC
AAGCTGTTATTAGTTCCTGGTGAGAGGTGTTCTTTGCAGATGTACATACTCTTGGCCCACTTGA
CACTTACTTCTAGGGTCAATACAACAAAGCATTTATTTATCTGAAATACATGTTAACTAGTACG
GTATAGTGCAGTGAGAAATACCTCTGTTTTAAGCAGTCCTCCCAATGCCAGAAGAGCAGAAGTG
AGTACCCATCTTTTGTTTCAGGTAAAATGTCTAGCGGGCGTTGGATAAGACTTTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.017261408
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b