Plant Circular RNA Database

Detail information of ENSRNA049494706_circ_g.3

			
						 General Information
					
						CircRNA Name
						ENSRNA049494706_circ_g.3
					
						ID in PlantcircBase
						osi_circ_008957
					
						Alias
						Chr02:29972368_29972613(ZS97RS2)
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr11: 10191362-10191607  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							ENSRNA049494706						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							ENSRNA049494706_circ_igg.1 ENSRNA049494706_circ_g.1 ENSRNA049494706_circ_g.2 ENSRNA049494706_circ_g.4 						
					
						Support reads
						NA
					
						Tissues
						root, leaf, panicle
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						ENSRNA049494706-T1:1

General Information
CircRNA Name	ENSRNA049494706_circ_g.3
ID in PlantcircBase	osi_circ_008957
Alias	Chr02:29972368_29972613(ZS97RS2)
Organism	Oryza sativa ssp. indica
Position	chr11: 10191362-10191607 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	ENSRNA049494706
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	ENSRNA049494706_circ_igg.1 ENSRNA049494706_circ_g.1 ENSRNA049494706_circ_g.2 ENSRNA049494706_circ_g.4
Support reads	NA
Tissues	root, leaf, panicle
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	ENSRNA049494706-T1:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCAC
GATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCgcaagcggcgcctgcgcccgccgcccgc
cccgacccacgttaggggcgcaagcccccaagggcccgtgccaccggccaagccggcccggccg
acgcgccg

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							GCAAGCGGCGCCTGCGCCCGCCGCCCGCCCCGACCCACGTTAGGGGCGCAAGCCCCCAAGGGCC
CGTGCCACCGGCCAAGCCGGCCCGGCCGACGCGCCGCGGCCGGCCGCCTCGAAGCTCCCTTCCC
AACGGGCGGCGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCA
GAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTC

Sequences
Splice junction sequence	TCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCAC GATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCgcaagcggcgcctgcgcccgccgcccgc cccgacccacgttaggggcgcaagcccccaagggcccgtgccaccggccaagccggcccggccg acgcgccg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GCAAGCGGCGCCTGCGCCCGCCGCCCGCCCCGACCCACGTTAGGGGCGCAAGCCCCCAAGGGCC CGTGCCACCGGCCAAGCCGGCCCGGCCGACGCGCCGCGGCCGGCCGCCTCGAAGCTCCCTTCCC AACGGGCGGCGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCA GAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osa_circ_038246* osa_circ_038291 osa_circ_038368 osa_circ_038365 
osa_circ_038328 osa_circ_038325 osa_circ_038248 osa_circ_038182 
osa_circ_038179 osa_circ_038367 osa_circ_038327 osa_circ_038288 
osa_circ_038247 osa_circ_038181 osa_circ_038361 osa_circ_038370 
osa_circ_038364 osa_circ_038363 osa_circ_038330 osa_circ_038292 
osa_circ_038251 osa_circ_038244 osa_circ_038187 osa_circ_038366 
osa_circ_038326 osa_circ_038245 osa_circ_038180 osa_circ_038362 
osa_circ_038324 osa_circ_038287 osa_circ_038243 osa_circ_038178 
osa_circ_038186 osa_circ_038190 osa_circ_016079 osa_circ_038295 
osa_circ_038188 osa_circ_038284 osa_circ_038371 osa_circ_038294 
osa_circ_038252 osa_circ_038189 ecr_circ_000677* osa_circ_038174 
osa_circ_038358 osa_circ_038238 osa_circ_038175 						
					
						PMCS

Conservation Information
Conserved circRNAs	osa_circ_038246* osa_circ_038291 osa_circ_038368 osa_circ_038365 osa_circ_038328 osa_circ_038325 osa_circ_038248 osa_circ_038182 osa_circ_038179 osa_circ_038367 osa_circ_038327 osa_circ_038288 osa_circ_038247 osa_circ_038181 osa_circ_038361 osa_circ_038370 osa_circ_038364 osa_circ_038363 osa_circ_038330 osa_circ_038292 osa_circ_038251 osa_circ_038244 osa_circ_038187 osa_circ_038366 osa_circ_038326 osa_circ_038245 osa_circ_038180 osa_circ_038362 osa_circ_038324 osa_circ_038287 osa_circ_038243 osa_circ_038178 osa_circ_038186 osa_circ_038190 osa_circ_016079 osa_circ_038295 osa_circ_038188 osa_circ_038284 osa_circ_038371 osa_circ_038294 osa_circ_038252 osa_circ_038189 ecr_circ_000677* osa_circ_038174 osa_circ_038358 osa_circ_038238 osa_circ_038175
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhou et al., 2021

circRNA

Detail information of ENSRNA049494706_circ_g.3

Address

Any questions?

Supported by