Plant Circular RNA Database

Detail information of Os03g0266200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0266200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_019035
					
						Alias
						Os_ciR9210
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 8801056-8803223  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os03g0266200						
					
						Parent gene annotation
						
							Similar to Enolase (EC 4.2.1.11) (Fragment). (Os03t0266200-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0266200-01:6

General Information
CircRNA Name	Os03g0266200_circ_g.1
ID in PlantcircBase	osa_circ_019035
Alias	Os_ciR9210
Organism	Oryza sativa
Position	chr3: 8801056-8803223 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os03g0266200
Parent gene annotation	Similar to Enolase (EC 4.2.1.11) (Fragment). (Os03t0266200-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0266200-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTACAGACGATTCCTTACTTGCCTGGAAATATTTGGAGCAAATCCACCATCATCACCTATGTT
GCAGCTGTTTGAACCATATTTCTCCAAGATGATATCctgattgtatttactgagacattctcca
cggcaaggagcacccgctttgatctgtccagcagcagcaccaacagccaagtcagcaatgaaag
aatcatca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 651
Transcript exons: 8801056-8801253,8801831-8801917,8801986-8802071,8802162-
8802260,8802938-8803041,8803147-8803223
CTGATTGTATTTACTGAGACATTCTCCACGGCAAGGAGCACCCGCTTTGATCTGTCCAGCAGCA
GCACCAACAGCCAAGTCAGCAATGAAAGAATCATCAGTGTCCCCGGACCTATGTGACACCATTA
CGCCCCAATGAGCATCCTTTGCCTGTCTCACAACCTCTATGGCTTCCGTGACAGTGCCTACTTG
ATTAGCCTTGAGAACAAGAGCATTGCAGGTATACTCATTTACTGCCCGCTTAATGCGTTCGGGA
TCTGACATCAATAAGTCATCACCTACAACCTGGCACAGCTCTAGGGTGGTAAACTTCTTCGAAT
GCTCCCAGTCATCTTTATCAAAGGGCTGTTCGATTGAGACAAGTGGGTACTCTGAACAAAGCTG
GCTATAAATCTCAATCAAATCATCTGCAGTTTTGAAGCCCTGCCCTGATTTCTCTGCAAACTTG
AACTCCATGTCATACTTATTTCCCATGCAAAAATCGGTAGCGGCGACATCAATTGCTAGCTTGA
TCCTTCCATTATATCCAGCTCTATTTATTGCCTCAATGACAAGATCCAAGCCTTCGGTTATGCT
GGAAATATTTGGAGCAAATCCACCATCATCACCTATGTTGCAGCTGTTTGAACCATATTTCTCC
AAGATGATATC
						
					

						Genomic sequence
						
							CTGATTGTATTTACTGAGACATTCTCCACGGCAAGGAGCACCCGCTTTGATCTGTCCAGCAGCA
GCACCAACAGCCAAGTCAGCAATGAAAGAATCATCAGTGTCCCCGGACCTATGTGACACCATTA
CGCCCCAATGAGCATCCTTTGCCTGTCTCACAACCTCTATGGCTTCCGTGACAGTGCCTACTTG
ATTAGCCTGCATATCATACACAAGCACAATTCAGGTATATACTAAATGACCTTTGAGGTTGAGA
GAGAAATCAGTGATCAAGGAAGATTCCAGAAAATAAATACTTCATACTTCATTTGCATGCAAAT
ATCGTTTGCACCTCTATGTCTACAACATGCTAAAAGTTAAAAAGTAAATTCCTCCAGTGGATAG
TTAATCTTGAATTATTATCATATTAATTTATGTAAATGCCTATTCAAGTACTAAATGCCAAACG
TGTGAATTGACTATTTGTATGCTAGCCTATTAACGATTGGTTTTCATTGCATTGTTTGTAAATG
CCTTAGAAATCAACTCATATGACACAAAACTTGAACTATAATCAACACTGGAATGGCAGTGTCA
CTTAAATAAGATTCAAAGGGAGCACTGAGCGTCCCGGCACAAAGATGACAACAACTATTAATAT
AGTAATATTAATTCCAAATCTTTCTTTCAGATGGTATTAATCTTGGATAGTTCCAATAATACGA
GTAAGATGTTGCACAAAGTAGCTCTAATCAGTTTCGGTGCATTAAAAATAGAAGTATAACTTAT
ACTTCACCTTGAGAACAAGAGCATTGCAGGTATACTCATTTACTGCCCGCTTAATGCGTTCGGG
ATCTGACATCAATAAGTCATCACCTACAACCTGAACAAATGTTATGTCATGAGATACTGAACAA
GAAGAATAAAAGCTCAAAAGAACATATTAGCCACCTGGCACAGCTCTAGGGTGGTAAACTTCTT
CGAATGCTCCCAGTCATCTTTATCAAAGGGCTGTTCGATTGAGACAAGTGGGTACTCTAGCGTA
TAATAAAGAAAAGGGGAAATATAAGCCTCATGAATGAAATCAAAAGATGTAACAAAAAGATTTT
AATCCAGACATGTGATACCTGAACAAAGCTGGCTATAAATCTCAATCAAATCATCTGCAGTTTT
GAAGCCCTGCCCTGATTTCTCTGCAAACTTGAACTCCATGTCATACTTATTTCCTGCACAAAAT
GCATGAATATAGCCAGAAATTTAGGTCATCGATATATCAAAACAAACTAACCATAGCATACAAC
ACATTCTAATTGCTGTTCAAGTTCTCTGCTTCTATGGTTCAAAGTTGTACGGTTAATATAAGCC
ATTAGGTTGACGGCTGACCAGCAATACTGAATGGCATAATTCCACTGATGACACAAAGAAGAAT
GAATACTAGGTGGCCATGAAAAATAGTACTCCCTCCGTCCCAAAATATAACAATTTTTACCACT
TAGGATTTGTTCCAAAATATAACAACTTCTCCACCAACATTCCCTTCCCAACCAATCACAACCC
CTTCCTATTCAATTTTACCTACTTTCTTAATAACCGTGCCCAACTCTAAAACTCTCTATATTCT
GGGATAGAGGGAGTAAAATCAAGAGATGACACAAGAAGAGTGAACAGAAATGCCATAGGTACAT
AAGCTGAAAAACATGGAAATAATGAAAAATGAGTTATCAACAGAGTCATGGATTTTCTCAAATA
ATAAGGAACTCTTTCTTTAATGCATGAGAGATCAGCAGAGAGCTTGTATTCGATCAATCAGATA
TCATTCACATGATTCTTTATTTGATCAAGGGAACTGCATATTAAACAATCACACAACCAATACC
CAAGAAATCACTCTTTCTATCCTTACCCATGCAAAAATCGGTAGCGGCGACATCAATTGCTAGC
TTGATCCTTCCATTATATCCAGCTCTATTTATTGCCTCAATGACAAGATCCAAGCCTTCGGTTA
TGCTGAACATTGACCCAACGGATACGGCACATTGATATCAATATGCAGGTGACCAAAAGGGAAA
CAATAATAGAACCACAAAAAGGTACAGACGATTCCTTACTTGCCTGGAAATATTTGGAGCAAAT
CCACCATCATCACCTATGTTGCAGCTGTTTGAACCATATTTCTCCAAGATGATATC
						
					

			
		

Sequences
Splice junction sequence	GGTACAGACGATTCCTTACTTGCCTGGAAATATTTGGAGCAAATCCACCATCATCACCTATGTT GCAGCTGTTTGAACCATATTTCTCCAAGATGATATCctgattgtatttactgagacattctcca cggcaaggagcacccgctttgatctgtccagcagcagcaccaacagccaagtcagcaatgaaag aatcatca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 651 Transcript exons: 8801056-8801253,8801831-8801917,8801986-8802071,8802162- 8802260,8802938-8803041,8803147-8803223 CTGATTGTATTTACTGAGACATTCTCCACGGCAAGGAGCACCCGCTTTGATCTGTCCAGCAGCA GCACCAACAGCCAAGTCAGCAATGAAAGAATCATCAGTGTCCCCGGACCTATGTGACACCATTA CGCCCCAATGAGCATCCTTTGCCTGTCTCACAACCTCTATGGCTTCCGTGACAGTGCCTACTTG ATTAGCCTTGAGAACAAGAGCATTGCAGGTATACTCATTTACTGCCCGCTTAATGCGTTCGGGA TCTGACATCAATAAGTCATCACCTACAACCTGGCACAGCTCTAGGGTGGTAAACTTCTTCGAAT GCTCCCAGTCATCTTTATCAAAGGGCTGTTCGATTGAGACAAGTGGGTACTCTGAACAAAGCTG GCTATAAATCTCAATCAAATCATCTGCAGTTTTGAAGCCCTGCCCTGATTTCTCTGCAAACTTG AACTCCATGTCATACTTATTTCCCATGCAAAAATCGGTAGCGGCGACATCAATTGCTAGCTTGA TCCTTCCATTATATCCAGCTCTATTTATTGCCTCAATGACAAGATCCAAGCCTTCGGTTATGCT GGAAATATTTGGAGCAAATCCACCATCATCACCTATGTTGCAGCTGTTTGAACCATATTTCTCC AAGATGATATC
Genomic sequence	CTGATTGTATTTACTGAGACATTCTCCACGGCAAGGAGCACCCGCTTTGATCTGTCCAGCAGCA GCACCAACAGCCAAGTCAGCAATGAAAGAATCATCAGTGTCCCCGGACCTATGTGACACCATTA CGCCCCAATGAGCATCCTTTGCCTGTCTCACAACCTCTATGGCTTCCGTGACAGTGCCTACTTG ATTAGCCTGCATATCATACACAAGCACAATTCAGGTATATACTAAATGACCTTTGAGGTTGAGA GAGAAATCAGTGATCAAGGAAGATTCCAGAAAATAAATACTTCATACTTCATTTGCATGCAAAT ATCGTTTGCACCTCTATGTCTACAACATGCTAAAAGTTAAAAAGTAAATTCCTCCAGTGGATAG TTAATCTTGAATTATTATCATATTAATTTATGTAAATGCCTATTCAAGTACTAAATGCCAAACG TGTGAATTGACTATTTGTATGCTAGCCTATTAACGATTGGTTTTCATTGCATTGTTTGTAAATG CCTTAGAAATCAACTCATATGACACAAAACTTGAACTATAATCAACACTGGAATGGCAGTGTCA CTTAAATAAGATTCAAAGGGAGCACTGAGCGTCCCGGCACAAAGATGACAACAACTATTAATAT AGTAATATTAATTCCAAATCTTTCTTTCAGATGGTATTAATCTTGGATAGTTCCAATAATACGA GTAAGATGTTGCACAAAGTAGCTCTAATCAGTTTCGGTGCATTAAAAATAGAAGTATAACTTAT ACTTCACCTTGAGAACAAGAGCATTGCAGGTATACTCATTTACTGCCCGCTTAATGCGTTCGGG ATCTGACATCAATAAGTCATCACCTACAACCTGAACAAATGTTATGTCATGAGATACTGAACAA GAAGAATAAAAGCTCAAAAGAACATATTAGCCACCTGGCACAGCTCTAGGGTGGTAAACTTCTT CGAATGCTCCCAGTCATCTTTATCAAAGGGCTGTTCGATTGAGACAAGTGGGTACTCTAGCGTA TAATAAAGAAAAGGGGAAATATAAGCCTCATGAATGAAATCAAAAGATGTAACAAAAAGATTTT AATCCAGACATGTGATACCTGAACAAAGCTGGCTATAAATCTCAATCAAATCATCTGCAGTTTT GAAGCCCTGCCCTGATTTCTCTGCAAACTTGAACTCCATGTCATACTTATTTCCTGCACAAAAT GCATGAATATAGCCAGAAATTTAGGTCATCGATATATCAAAACAAACTAACCATAGCATACAAC ACATTCTAATTGCTGTTCAAGTTCTCTGCTTCTATGGTTCAAAGTTGTACGGTTAATATAAGCC ATTAGGTTGACGGCTGACCAGCAATACTGAATGGCATAATTCCACTGATGACACAAAGAAGAAT GAATACTAGGTGGCCATGAAAAATAGTACTCCCTCCGTCCCAAAATATAACAATTTTTACCACT TAGGATTTGTTCCAAAATATAACAACTTCTCCACCAACATTCCCTTCCCAACCAATCACAACCC CTTCCTATTCAATTTTACCTACTTTCTTAATAACCGTGCCCAACTCTAAAACTCTCTATATTCT GGGATAGAGGGAGTAAAATCAAGAGATGACACAAGAAGAGTGAACAGAAATGCCATAGGTACAT AAGCTGAAAAACATGGAAATAATGAAAAATGAGTTATCAACAGAGTCATGGATTTTCTCAAATA ATAAGGAACTCTTTCTTTAATGCATGAGAGATCAGCAGAGAGCTTGTATTCGATCAATCAGATA TCATTCACATGATTCTTTATTTGATCAAGGGAACTGCATATTAAACAATCACACAACCAATACC CAAGAAATCACTCTTTCTATCCTTACCCATGCAAAAATCGGTAGCGGCGACATCAATTGCTAGC TTGATCCTTCCATTATATCCAGCTCTATTTATTGCCTCAATGACAAGATCCAAGCCTTCGGTTA TGCTGAACATTGACCCAACGGATACGGCACATTGATATCAATATGCAGGTGACCAAAAGGGAAA CAATAATAGAACCACAAAAAGGTACAGACGATTCCTTACTTGCCTGGAAATATTTGGAGCAAAT CCACCATCATCACCTATGTTGCAGCTGTTTGAACCATATTTCTCCAAGATGATATC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.237485997

Conservation Information
Conserved circRNAs	NA
PMCS	0.237485997

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							8802246-8801056(+)
8802943-8801058(-)
8801155-8803183(-)
						
						Potential amino acid sequence
						
							MSYLFPMQKSVAATSIASLILPLYPALFIASMTRSKPSVMLEIFGANPPSSPMLQLFEPYFSKM
IS*(+)
MGNKYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQV
VGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSGDTDDS
FIADLAVGAAAGQIKAGAPCRGECLSKYNQDIILEKYGSNSCNIGDDGGFAPNISSITEGLDLV
IEAINRAGYNGRIKLAIDVAATDFCMGNKYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLV
SIEQPFDKDDWEHSKKFTTLELCQVVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAI
EVVRQAKDAHWGVMVSHRSGDTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQDIILEKYGS
NSCNIGDDGGFAPNISSITEGLDLVIEAINRAGYNGRIKLAIDVAATDFCMGNKYDMEFKFAEK
SGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQVVGDDLLMSDPERIK
RAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSGDTDDSFIADLAVGAAAGQI
KAGAPCRGECLSKYNQDIILEKYGSNSCNIGDDGGFAPNISSITEGLDLVIEAINRAGYNGRIK
LAIDVAATDFCMGNKYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHS
KKFTTLELCQVVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVM
VSHRSGDTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQ(-)
MILSLLTWLLVLLLDRSKRVLLAVENVSVNTIRISSWRNMVQTAAT*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	8802246-8801056(+) 8802943-8801058(-) 8801155-8803183(-)
Potential amino acid sequence	MSYLFPMQKSVAATSIASLILPLYPALFIASMTRSKPSVMLEIFGANPPSSPMLQLFEPYFSKM IS(+) MGNKYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQV VGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSGDTDDS FIADLAVGAAAGQIKAGAPCRGECLSKYNQDIILEKYGSNSCNIGDDGGFAPNISSITEGLDLV IEAINRAGYNGRIKLAIDVAATDFCMGNKYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLV SIEQPFDKDDWEHSKKFTTLELCQVVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAI EVVRQAKDAHWGVMVSHRSGDTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQDIILEKYGS NSCNIGDDGGFAPNISSITEGLDLVIEAINRAGYNGRIKLAIDVAATDFCMGNKYDMEFKFAEK SGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQVVGDDLLMSDPERIK RAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSGDTDDSFIADLAVGAAAGQI KAGAPCRGECLSKYNQDIILEKYGSNSCNIGDDGGFAPNISSITEGLDLVIEAINRAGYNGRIK LAIDVAATDFCMGNKYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHS KKFTTLELCQVVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVM VSHRSGDTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQ(-) MILSLLTWLLVLLLDRSKRVLLAVENVSVNTIRISSWRNMVQTAAT(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os03g0266200_circ_g.1

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