Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d041746_circ_g.1 |
ID in PlantcircBase | zma_circ_007645 |
Alias | zma_circ_0001169 |
Organism | Zea mays |
Position | chr3: 135775822-135776062 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d041746 |
Parent gene annotation |
Pinoresinol reductase 2 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d041746_T001:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.24002953 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
135775847-135775874(+) 135775932-135775874(+) 135775996-135775912(+) 135775942-135775995(-) |
Potential amino acid sequence |
MDPSKMGHALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVH VYGDGNVKAFYTIGIRHGSIQDGACS*(+) MPTFLTPMFLPIALLLTSAQTYVRCAPFCRPKKKFMYMETAMSKRFIPSEFGMDPSKMGHALEP GRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGDGNVKAFYT IGIRHGSIQDGACS*(+) MSDAHPFAAQRKSSCIWRRQCQSVLYHRNSAWIHPRWGMLLNQEGLHLMKRWT*(+) MLASSIARLRSIFSSNVTLPGSRACPILDGSMPNSDGIKRFDIAVSIYMNFFFGRQKGAHLT*( -) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |