Detail information of Zm00001d041746_circ_g.1


General Information
CircRNA Name Zm00001d041746_circ_g.1
ID in PlantcircBase zma_circ_007645
Alias zma_circ_0001169
Organism Zea mays
Position chr3: 135775822-135776062  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d041746
Parent gene annotation Pinoresinol reductase 2
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d041746_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTGCTTTGCTGCTTACTTCTGCCCAAACCTATGTCAGATGCGCACCCTTTTGCCGCCCAAAG
AAAAAGTTCATGTATATGGAGACGGCAATGTCAAAGcgttttataccatcggaattcggcatgg
atccatccaagatggggcatgctcttgaaccaggaagggttacatttgatgaaaagatggacct
aaggcgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTTTATACCATCGGAATTCGGCATGGATCCATCCAAGATGGGGCATGCTCTTGAACCAGGAA
GGGTTACATTTGATGAAAAGATGGACCTAAGGCGTGCAATAGAAGATGCCAACATTCCTCACAC
CTATGTTTCTGCCAATTGCTTTGCTGCTTACTTCTGCCCAAACCTATGTCAGATGCGCACCCTT
TTGCCGCCCAAAGAAAAAGTTCATGTATATGGAGACGGCAATGTCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.24002953
Functional Information
Coding potential Y
Potential coding position 135775847-135775874(+)
135775932-135775874(+)
135775996-135775912(+)
135775942-135775995(-)
Potential amino acid sequence MDPSKMGHALEPGRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVH
VYGDGNVKAFYTIGIRHGSIQDGACS*(+)
MPTFLTPMFLPIALLLTSAQTYVRCAPFCRPKKKFMYMETAMSKRFIPSEFGMDPSKMGHALEP
GRVTFDEKMDLRRAIEDANIPHTYVSANCFAAYFCPNLCQMRTLLPPKEKVHVYGDGNVKAFYT
IGIRHGSIQDGACS*(+)
MSDAHPFAAQRKSSCIWRRQCQSVLYHRNSAWIHPRWGMLLNQEGLHLMKRWT*(+)
MLASSIARLRSIFSSNVTLPGSRACPILDGSMPNSDGIKRFDIAVSIYMNFFFGRQKGAHLT*(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b