Detail information of BGIOSGA021226_circ_igg.1


General Information
CircRNA Name BGIOSGA021226_circ_igg.1
ID in PlantcircBase osi_circ_016201
Alias Chr06:13891308_13894929(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr6: 17353797-17357418  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA021223_circ_igg.1 BGIOSGA021226_circ_igg.2 BGIOSGA021226_circ_igg.3 BGIOSGA021223_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTTTGCAACATTAACCATATATAACGAAAAATTTATGTTTCTTACCAGTTCACCAGACTGGG
ACAATCTATGGGAAAGGAAGGCAGCAACATCATACCcctttcgatcgaagtgactaagcaatca
ccgaatcaaccacagcctctttagcagcatttgctgctccagcagcatgtagaatctcaagtct
gtagtcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCGATCGAAGTGACTAAGCAATCACCGAATCAACCACAGCCTCTTTAGCAGCATTTGCTG
CTCCAGCAGCATGTAGAATCTCAAGTCTGTAGTCAGTTTCTGGCCGACGACACATCTTCCTCAG
TGGAACAATTTCCTGCCATTTTAAACAAAGCATAAATACTAATAAATGGAGATACATGTAGTAA
CAAATCATTATGTTTCAGTTATACAACTAGCAGCTGGATAATATAGCAGAAAAGTATTGTTTTA
CACTCCCAATAAAGTAGTGTTTTAGCACATGTTACTAGAGAAGAAATGAAATTGCTTATGGAAC
AGGAACATAAACAATGACACTAACCTATATAGCGATAATGTATACTACTAAACTAAAAGAGAGT
AGCGGTGGTCATGGTTCTACCGGCACCACTACCACCATCATAGGCCATGATATTAGGATTTGGA
TAAGTCAATCTACTAGTCTGTCTTCCGTGGACTGCAGCTCCTTAATTTTCTAAACATGGCATTT
TGTTTGTTTTTAATATAAAAAGTACTGTTTGAACCAACTAAATACACATATTTTTAACAAAAAC
TTGATTTTGCTATGTTCTCAGGAATTTGCTGCAGCGCATGACCAATTAGCTATTATGGGTTAAA
CATACACAAACTAATATATGAACATATATAGTAAAATGGGAACTTTTAGAGTCCAACCTACTGT
TAGTTTGTATTGACAATATAGGTGATCCAAGGGTTTATATGTACTCTTTCTATACTACTTGATT
GAGGCAATTGTGTGAATTGGATAAAATTTATTTTCTTTCTATACTATTGGATTGGGGCGATTGT
GTAAATTCATGGCCTACAAGGAAATGGTAGGTGTTTTTCCTACAAGATCCAATTTCCTATTCAT
TGTCATCCTTCACAATGACAATGGCAAGGCGCTGCCAGTGCCAGCTACCGTGAATCCACATGTC
CCTCCACCAATTACCACAACTGGATGACTCAATACTAAAGCATAAGATTACTAAAATATCATAT
TTTTTTACTTTTGTGGCAAACTCCTAAACTTCCCTTCTTTATACTACCAATAAATCGTACTGTA
GACATTCTCATCGGTATAAATTCCATAACAACTTTACAAACATAGAAAAAAATATTCATATACG
TTGTTATGGAATGATGAATTGCTACATGCATATATATAAGCTCCTTCAACTTGTTGGTTGAACA
AACATGAAATTGCTTATGCGAGTTCAAACTACAACCATGCTTCAAGAACTACAGCGCTTATTTA
TATGGAAGTACATAATTTAATTAAAACATGATGCTTAGTGCATGCATTACTACAATGGTCACAT
CAAATTTAATGGGCGGAGTGAATGACATACCTCAGAGTCATCATGATCATAGCAAACAAGAAAT
CTGCAACGACAACCTCTTGCATCATGCCTACGCTTTTGAGCATCAAGGACATGAGCATCAAAAT
ACAGAGCCTGATGTTTGCCTTCCTGGTAAATTTAGGGTAGATGTAATTATTGGTGTGAGCCAAC
AATTTGTGTAAGTAATAGTACTTTAAAAGAAAAATTGAGAGAAAACAAAGATCAAACCAATGAT
ATGATTCACCTACTAAGAATATTTAACGCCCATCTGTATTTTTGGAACAACATTTTATTTCACA
TTTATCAAAGTTATGAAAAAATTATGCCTATATCTCTCCACTTAGGGATATGAATTTAAAGATG
AGACTTTACATGTAAATGTAATACTACTGAAAGTACATGTATATTTTTTGGTGAATTTTTTTAA
GTTAGTGTGCACAGTCTGTACACGAGAAGCCTTGTGGGCATAGGATATGTTCCCCTAGCTTATG
CCCCTTCTGTTTTTACAGAAATATATTATACGAATAGACATCCTTTATTTTGGCAAAAGAATTA
ATGTAAAAATAAAATATCGTCTTAGAGTAGAGCAAACAGAAAACACCCTTCCATCATTTTCTAA
CTTCAAGTCAAAATTCTGAATGGATACAACTAGACTTCAATTCTGATAAAAGTAAAACATGGCC
AGACCTGGAAGCAAAGAATTTGGTCCCCAGGAAGAACAGCGGCACATTCGGTTGACACACATGG
ATGAGAACGTTGCCGCACACATGTACGGACATCAATCCATTCGTCGTCCCTAGCTCCAAATCCA
GAAAATCGAACCCATACTTCCTAAAATACAAATAATTGTTCTATTAGAAATTATTTTAATATAC
ATGCCTTTAACAAAGCTAAGTAACACAGATATATGATACTACTACTACAAAACATGTAATCACT
GCCGCCCCATCAATGCCGGTTAGTTAAAACCCGGCACTGATAGGGGTTTTCCCACCATCTCAAC
CTTTGTGCACCATAAAAAAACACCTGACACTAATAAGGTCATCAGTATTGGTCATTAAAATAAA
ATTACACTGATGCATCCAATACGTATTAGTCCTGGTTTTTTATACATGTACTGATACGAGGACA
TCAGTGCTAGTCCACCTTTTGCACCACCAGCGTCCTCCCCTGTCCCCCCCCTCCCCTCCACCCC
ATCGCCTGCGCCTCCCCTTTTCTTAGTCACTAGCTCTCCACTATTCTACGCCACCATCGCAGTC
ACCTGTTTCTTCCCGATGGCTAGGCCACCAGATCTAGCCGCCTTAAGGACAGGGGCGACAACCA
CATGGTCCAATGAGTGGTGTCGGCCTCCCCCTCTCCTTAATGGTCGGATGGCATGTGCAGTTTG
AGGTTGACAACGGCTGCGAGGGAGATCAACGATGGCGTTGGCAGTGACTCCATTTAGTAGTGTT
GTTGTTCTGTTGTACTTCTAATATGGCAGTTGGATTTGGTCTGTGATGTGGTTTTGCAGTTATT
GATGATGTTGATGAATAATTGAATCAATCAATGTCAATAGCCTGCTGTTGATTTGTGATGTGGT
TGTTCTCATCTTTGACCTCTGGATGTGGAATTCACGTTCTTAATCTGCAAATATGGATGGGGAT
TTGGTGGCAAATGTGCATTGGATTTGGTTGCATTAATGTTTATATTACCAGCCTATTCTTTTTA
TTTTTGGCTCAGGAGTGCCAGTTGGGAAACCGGCTCATCAACCAGCTAATGAGCCCTCCTCACC
AGCGCCCCAATCATCCCAATGGTAGTGCCGGTACTGATGATATTCTATAGTACACACATACACG
ATTTTACAGAAATTCTGCTAGTACTAGACCAACACGCAACTATATGGAAAAAAATAAAAAATCT
TTAATTATCTACAAATTTCCTTTTGTATATTGGCATATGTTGAGAAGAAAAAACAAATTTATTC
AACTCTAGTGTTTTTTTTTTATGTAAGGCCTGGTCTAGCAGATACACAATGTTCACAAAGTTAT
ATTAACACCCTGGTACATTGACAAAAAAAAAAAAAAGATAAAATCTCGCAAATCGTACTTTGAC
AAACGATAAAATGGAATCATCTAGGTTGAAAGCAGAAAATTGCTTTCATTAAGAAAGCAAAAGA
CGAGTTTTGCAACATTAACCATATATAACGAAAAATTTATGTTTCTTACCAGTTCACCAGACTG
GGACAATCTATGGGAAAGGAAGGCAGCAACATCATACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021