Detail information of BGIOSGA036799_circ_g.2


General Information
CircRNA Name BGIOSGA036799_circ_g.2
ID in PlantcircBase osi_circ_003275
Alias 12:463610|464544
Organism Oryza sativa ssp. indica
Position chr12: 463610-464544  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA036799
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA036808_circ_ag.1 BGIOSGA036852_circ_g.1 BGIOSGA036799_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA036799-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAGGAGGGGCGAAGAACTGTTACAGTTAAACTCACAAGTTCTAAGCTAGTAGAGAATGGCATG
CACTTACATGTTCAGAGTAGCGAGTTTTGTCTTTTCctgtcacttggtagggggatgtcaatct
cccctgataggaggctctcgatctcggagagcatgtcgtcatcatctgaaagagctgaattgat
tatgccgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTCACTTGGTAGGGGGATGTCAATCTCCCCTGATAGGAGGCTCTCGATCTCGGAGAGCATGT
CGTCATCATCTGAAAGAGCTGAATTGATTATGCCGCTGATTGTTTTAACCTCTTCCTTCTCTTC
TTCTTTCTCCCCCTGAACCACAGCAATTGAAAAGAACAGTTAAACTCACAAGTTTTGAGCTAGT
AGAGAATGACATTCACTTACGTGTTCAGAACAGTTACAGTTTTTTTGGGAATATGCGAGACGCA
TATTTTTTATTAAGAGGAATAAATGTATTCACAGAACGGGCCTGAAAAATAAAAAGAAAGGGAC
AGGGTACAGAAGAGGGGAAGAGAAAAGTAGAAGCCTAATCTCCCGAATGATTTGGCGACCAAAG
AACAAGCGAAGGGACTGTCATGGTTGGTATGGCTGATCTAGCCATCCGCCAGAGGTCCGCTTCC
CCCATCATAGCCCTAGCTATCTCCATCCAAGGTCTGCTCTTCTGGTTGAAGACCCGGTTGTTCC
TTTCCTTCCAGATTATCCATGCTACTAGTGCCGCAATTGTGTCGAACCCTCGGCGATGGTCTTT
AATCATCCTTTTGCGACTGTCACACAACCAGACATGAAAGGACTGCTCATTGAGAGGCAGACAT
TCAGAATGACCGATAGCAGTAAGAGCAATCCACCAAAGCTGCCGAGACTCCGGGCATGCGACCA
GGAGATGATCAATCGTTTCGTCGCATTGATCACAGAGGGGGCAACGATCCGGGTGCGACAGACC
TCGGCTTCGAAGGCGGTCCGCCGTCCAGCATCGGTTGAGGGCGACCAGCCAGAGGAAGTAACGG
CATCGAGGAGGGGCGAAGAACTGTTACAGTTAAACTCACAAGTTCTAAGCTAGTAGAGAATGGC
ATGCACTTACATGTTCAGAGTAGCGAGTTTTGTCTTTTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021