Detail information of Zm00001d015929_circ_g.3


General Information
CircRNA Name Zm00001d015929_circ_g.3
ID in PlantcircBase zma_circ_004980
Alias cold_test_circ_000230
Organism Zea mays
Position chr5: 132189313-132189564  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d015929
Parent gene annotation GTP-binding protein TypA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered Zm00001d015929_T002:2
Zm00001d015929_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATGTTCTGTTTCAACATGCCAGTGTGATTTCCAAACAGTCTATGCAAGTGGAATTAAAGGA
AAGGCCAGTCTATCTCCTGACAATTTAGCTGATGACcctactgctcgtcctgagtttgtggtga
attcaacatttgaactatttattgaattaaatgcaactgatgaacaggtaaacagttatggtat
cctactat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTACTGCTCGTCCTGAGTTTGTGGTGAATTCAACATTTGAACTATTTATTGAATTAAATGCAA
CTGATGAACAGGTAAACAGTTATGGTATCCTACTATTCATATAATTTGTTTTCAGTTTATCAAC
ACACGGCTTATCCTAATCCTCATGTTCATGTTCTGTTTCAACATGCCAGTGTGATTTCCAAACA
GTCTATGCAAGTGGAATTAAAGGAAAGGCCAGTCTATCTCCTGACAATTTAGCTGATGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.614495569
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018