Detail information of AT2G07662_circ_g.1


General Information
CircRNA Name AT2G07662_circ_g.1
ID in PlantcircBase ath_circ_013120
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3497172-3497357  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene AT2G07662
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing AT2G07662_circ_g.2
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GG-AG
Number of exons covered AT2G07662.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCTTCAATCAAATCAATAAGTTTATTTTTTTATTGATTCAGGGAAAAAACCTCCTTCTTAGA
ACCCATTGAGGGGGCCTCGGCCCGGGAAGaagctttgtcccttgctttacagagattgttatga
attgactaaatgactagattctcccggaacgctagctaagctaagaaatagtattagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGCTTTGTCCCTTGCTTTACAGAGATTGTTATGAATTGACTAAATGACTAGATTCTCCCGGAA
CGCTAGCTAAGCTAAGAAATAGTATTAGTTCCCTTCAATCAAATCAATAAGTTTATTTTTTTAT
TGATTCAGGGAAAAAACCTCCTTCTTAGAACCCATTGAGGGGGCCTCGGCCCGGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.475671356
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017