Plant Circular RNA Database

Detail information of Os07g0518500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0518500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_034054
					
						Alias
						Os_ciR10970
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 20013789-20014519  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os07g0518500						
					
						Parent gene annotation
						
							Similar to taxane 10-beta-hydroxylase. (Os07t0518500-01);Cytochr
ome P450 family protein. (Os07t0518500-02);Similar to taxane 10-
beta-hydroxylase. (Os07t0518500-03);Similar to cDNA clone:J01302
0I02, full insert sequence. (Os07t0518500-04)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0518500-03:2
Os07t0518500-02:2
Os07t0518500-01:2
Os07t0518500-04:2

General Information
CircRNA Name	Os07g0518500_circ_g.1
ID in PlantcircBase	osa_circ_034054
Alias	Os_ciR10970
Organism	Oryza sativa
Position	chr7: 20013789-20014519 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Os07g0518500
Parent gene annotation	Similar to taxane 10-beta-hydroxylase. (Os07t0518500-01);Cytochr ome P450 family protein. (Os07t0518500-02);Similar to taxane 10- beta-hydroxylase. (Os07t0518500-03);Similar to cDNA clone:J01302 0I02, full insert sequence. (Os07t0518500-04)
Parent gene strand	+
Alternative splicing	NA
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0518500-03:2 Os07t0518500-02:2 Os07t0518500-01:2 Os07t0518500-04:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							AATGGAGACAGTGCGAACAATCCCTCCAATTTTTGGGAGCTTCAGAACAGCTACCAGAGACATC
GAATACCAGGGCTATCACATTCCAAAAGGTTGGATGgttcttcctttggcaaagaggctcacat
tggacatcatctgctcggtcatcttcggacaagaggcaggttctgtcagagaagcccttgccac
cgacttcc

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 636
Transcript exons: 20013789-20014236,20014332-20014519
GTTCTTCCTTTGGCAAAGAGGCTCACATTGGACATCATCTGCTCGGTCATCTTCGGACAAGAGG
CAGGTTCTGTCAGAGAAGCCCTTGCCACCGACTTCCCGGCGATGGTGAGGGCTGCGCTGTCGAT
TCCAGTGAAGATACCTTTCACCAGGTTCAGCAGGGGCCTGAGTGCGAGCCAAAGGATCAGGAAG
TTGCTCAGGGGGATCGCTCGTGAGAGAGAGACGCTCTTGCAGCAGCAGCAGGCTCATGGCGCTT
CAGCAGCTGACGATTTCTTCACATACATGCTCGCCTTGCGTGCTGAAGGTGCGCACTCGCTCAC
GGTCGAGGACATCGTGGACAACGCGATCTTCCTTCTGATCGCAGGCTATGAGACGACATCTGTT
CTAATCACATTCATGCTCTGGCACCTGGACAAGGAGCCAGAAGTCCTTTCCAAGATAACTGAGG
AGCAAGATGAGATTGCCAGGAACAAGGGACCTGAGGATGCTCTAACCTGGGATGATGTTTCAAG
GATGAAGTACACATGGAAGGTGGCAATGGAGACAGTGCGAACAATCCCTCCAATTTTTGGGAGC
TTCAGAACAGCTACCAGAGACATCGAATACCAGGGCTATCACATTCCAAAAGGTTGGATG
						
						Genomic sequence
						
							GTTCTTCCTTTGGCAAAGAGGCTCACATTGGACATCATCTGCTCGGTCATCTTCGGACAAGAGG
CAGGTTCTGTCAGAGAAGCCCTTGCCACCGACTTCCCGGCGATGGTGAGGGCTGCGCTGTCGAT
TCCAGTGAAGATACCTTTCACCAGGTTCAGCAGGGGCCTGAGTGCGAGCCAAAGGATCAGGAAG
TTGCTCAGGGGGATCGCTCGTGAGAGAGAGACGCTCTTGCAGCAGCAGCAGGCTCATGGCGCTT
CAGCAGCTGACGATTTCTTCACATACATGCTCGCCTTGCGTGCTGAAGGTGCGCACTCGCTCAC
GGTCGAGGACATCGTGGACAACGCGATCTTCCTTCTGATCGCAGGCTATGAGACGACATCTGTT
CTAATCACATTCATGCTCTGGCACCTGGACAAGGAGCCAGAAGTCCTTTCCAAGATAACTGAGG
GTGAGCAGCTAGTAGTAGTACTTTTGCGTTGTGTTGATATCACTACTGTTAGTGTTTTCGATCT
TCTGCTGAGTAGCATTACTTTCTTTTCACAGAGCAAGATGAGATTGCCAGGAACAAGGGACCTG
AGGATGCTCTAACCTGGGATGATGTTTCAAGGATGAAGTACACATGGAAGGTGGCAATGGAGAC
AGTGCGAACAATCCCTCCAATTTTTGGGAGCTTCAGAACAGCTACCAGAGACATCGAATACCAG
GGCTATCACATTCCAAAAGGTTGGATG

Sequences
Splice junction sequence	AATGGAGACAGTGCGAACAATCCCTCCAATTTTTGGGAGCTTCAGAACAGCTACCAGAGACATC GAATACCAGGGCTATCACATTCCAAAAGGTTGGATGgttcttcctttggcaaagaggctcacat tggacatcatctgctcggtcatcttcggacaagaggcaggttctgtcagagaagcccttgccac cgacttcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 636 Transcript exons: 20013789-20014236,20014332-20014519 GTTCTTCCTTTGGCAAAGAGGCTCACATTGGACATCATCTGCTCGGTCATCTTCGGACAAGAGG CAGGTTCTGTCAGAGAAGCCCTTGCCACCGACTTCCCGGCGATGGTGAGGGCTGCGCTGTCGAT TCCAGTGAAGATACCTTTCACCAGGTTCAGCAGGGGCCTGAGTGCGAGCCAAAGGATCAGGAAG TTGCTCAGGGGGATCGCTCGTGAGAGAGAGACGCTCTTGCAGCAGCAGCAGGCTCATGGCGCTT CAGCAGCTGACGATTTCTTCACATACATGCTCGCCTTGCGTGCTGAAGGTGCGCACTCGCTCAC GGTCGAGGACATCGTGGACAACGCGATCTTCCTTCTGATCGCAGGCTATGAGACGACATCTGTT CTAATCACATTCATGCTCTGGCACCTGGACAAGGAGCCAGAAGTCCTTTCCAAGATAACTGAGG AGCAAGATGAGATTGCCAGGAACAAGGGACCTGAGGATGCTCTAACCTGGGATGATGTTTCAAG GATGAAGTACACATGGAAGGTGGCAATGGAGACAGTGCGAACAATCCCTCCAATTTTTGGGAGC TTCAGAACAGCTACCAGAGACATCGAATACCAGGGCTATCACATTCCAAAAGGTTGGATG
Genomic sequence	GTTCTTCCTTTGGCAAAGAGGCTCACATTGGACATCATCTGCTCGGTCATCTTCGGACAAGAGG CAGGTTCTGTCAGAGAAGCCCTTGCCACCGACTTCCCGGCGATGGTGAGGGCTGCGCTGTCGAT TCCAGTGAAGATACCTTTCACCAGGTTCAGCAGGGGCCTGAGTGCGAGCCAAAGGATCAGGAAG TTGCTCAGGGGGATCGCTCGTGAGAGAGAGACGCTCTTGCAGCAGCAGCAGGCTCATGGCGCTT CAGCAGCTGACGATTTCTTCACATACATGCTCGCCTTGCGTGCTGAAGGTGCGCACTCGCTCAC GGTCGAGGACATCGTGGACAACGCGATCTTCCTTCTGATCGCAGGCTATGAGACGACATCTGTT CTAATCACATTCATGCTCTGGCACCTGGACAAGGAGCCAGAAGTCCTTTCCAAGATAACTGAGG GTGAGCAGCTAGTAGTAGTACTTTTGCGTTGTGTTGATATCACTACTGTTAGTGTTTTCGATCT TCTGCTGAGTAGCATTACTTTCTTTTCACAGAGCAAGATGAGATTGCCAGGAACAAGGGACCTG AGGATGCTCTAACCTGGGATGATGTTTCAAGGATGAAGTACACATGGAAGGTGGCAATGGAGAC AGTGCGAACAATCCCTCCAATTTTTGGGAGCTTCAGAACAGCTACCAGAGACATCGAATACCAG GGCTATCACATTCCAAAAGGTTGGATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007218* 						
					
						PMCS
						0.205361731

Conservation Information
Conserved circRNAs	osi_circ_007218*
PMCS	0.205361731

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							20013895-20014516(+)
20014409-20014000(+)
20014039-20014393(-)
20013840-20014500(-)
						
						Potential amino acid sequence
						
							MVRAALSIPVKIPFTRFSRGLSASQRIRKLLRGIARERETLLQQQQAHGASAADDFFTYMLALR
AEGAHSLTVEDIVDNAIFLLIAGYETTSVLITFMLWHLDKEPEVLSKITEEQDEIARNKGPEDA
LTWDDVSRMKYTWKVAMETVRTIPPIFGSFRTATRDIEYQGYHIPKGWMVLPLAKRLTLDIICS
VIFGQEAGSVREALATDFPAMVRAALSIPVKIPFTRFSRGLSASQRIRKLLRGIARERETLLQQ
QQAHGASAADDFFTYMLALRAEGAHSLTVEDIVDNAIFLLIAGYETTSVLITFMLWHLDKEPEV
LSKITEEQDEIARNKGPEDALTWDDVSRMKYTWKVAMETVRTIPPIFGSFRTATRDIEYQGYHI
PKGWMVLPLAKRLTLDIICSVIFGQEAGSVREALATDFPAMVRAALSIPVKIPFTRFSRGLSAS
QRIRKLLRGIARERETLLQQQQAHGASAADDFFTYMLALRAEGAHSLTVEDIVDNAIFLLIAGY
ETTSVLITFMLWHLDKEPEVLSKITEEQDEIARNKGPEDALTWDDVSRMKYTWKVAMETVRTIP
PIFGSFRTATRDIEYQGYHIPKGWMVLPLAKRLTLDIICSVIFGQEAGSVREALATDFPAMVRA
ALSIPVKIPFTRFSRGLSASQRIRKLLRGIARERETLLQQQQAHGASAADDFFTYMLALRAEGA
HSLTVEDIVDNAIFLLIAGYETTSVLITFMLWHLDKEPEVLSKITEEQDEIARNKGPEDALTWD
DVSRMKYTWKVAMETVRTIPPIFGSFRTATRDIEYQGYHIPKGWM(+)
MEGGNGDSANNPSNFWELQNSYQRHRIPGLSHSKRLDGSSFGKEAHIGHHLLGHLRTRGRFCQR
SPCHRLPGDGEGCAVDSSEDTFHQVQQGPECEPKDQEVAQGDRS*(+)
MSLLLLQERLSLTSDPPEQLPDPLARTQAPAEPGERYLHWNRQRSPHHRREVGGKGFSDRTCLL
SEDDRADDVQCEPLCQRKNHPTFWNVIALVFDVSGSCSEAPKNWRDCSHCLHCHLPCVLHP*(-
)
MTEQMMSNVSLFAKGRTIQPFGM*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	20013895-20014516(+) 20014409-20014000(+) 20014039-20014393(-) 20013840-20014500(-)
Potential amino acid sequence	MVRAALSIPVKIPFTRFSRGLSASQRIRKLLRGIARERETLLQQQQAHGASAADDFFTYMLALR AEGAHSLTVEDIVDNAIFLLIAGYETTSVLITFMLWHLDKEPEVLSKITEEQDEIARNKGPEDA LTWDDVSRMKYTWKVAMETVRTIPPIFGSFRTATRDIEYQGYHIPKGWMVLPLAKRLTLDIICS VIFGQEAGSVREALATDFPAMVRAALSIPVKIPFTRFSRGLSASQRIRKLLRGIARERETLLQQ QQAHGASAADDFFTYMLALRAEGAHSLTVEDIVDNAIFLLIAGYETTSVLITFMLWHLDKEPEV LSKITEEQDEIARNKGPEDALTWDDVSRMKYTWKVAMETVRTIPPIFGSFRTATRDIEYQGYHI PKGWMVLPLAKRLTLDIICSVIFGQEAGSVREALATDFPAMVRAALSIPVKIPFTRFSRGLSAS QRIRKLLRGIARERETLLQQQQAHGASAADDFFTYMLALRAEGAHSLTVEDIVDNAIFLLIAGY ETTSVLITFMLWHLDKEPEVLSKITEEQDEIARNKGPEDALTWDDVSRMKYTWKVAMETVRTIP PIFGSFRTATRDIEYQGYHIPKGWMVLPLAKRLTLDIICSVIFGQEAGSVREALATDFPAMVRA ALSIPVKIPFTRFSRGLSASQRIRKLLRGIARERETLLQQQQAHGASAADDFFTYMLALRAEGA HSLTVEDIVDNAIFLLIAGYETTSVLITFMLWHLDKEPEVLSKITEEQDEIARNKGPEDALTWD DVSRMKYTWKVAMETVRTIPPIFGSFRTATRDIEYQGYHIPKGWM(+) MEGGNGDSANNPSNFWELQNSYQRHRIPGLSHSKRLDGSSFGKEAHIGHHLLGHLRTRGRFCQR SPCHRLPGDGEGCAVDSSEDTFHQVQQGPECEPKDQEVAQGDRS(+) MSLLLLQERLSLTSDPPEQLPDPLARTQAPAEPGERYLHWNRQRSPHHRREVGGKGFSDRTCLL SEDDRADDVQCEPLCQRKNHPTFWNVIALVFDVSGSCSEAPKNWRDCSHCLHCHLPCVLHP(- ) MTEQMMSNVSLFAKGRTIQPFGM*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os07g0518500_circ_g.1

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