Detail information of AT3G07820_circ_g.2


General Information
CircRNA Name AT3G07820_circ_g.2
ID in PlantcircBase ath_circ_020386
Alias 3:2497195-2497374
Organism Arabidpsis thaliana
Position chr3: 2497195-2497374  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G07820
Parent gene annotation Pectin lyase-like superfamily protein
Parent gene strand -
Alternative splicing AT3G07820_circ_g.1
Support reads 3
Tissues flower
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT3G07820.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTCCATCAGTGTTGGGACTGTCTTCTGGGGCGACGATCTTGATGTTATTCATGGTCATGTTC
TTGGCTCCCAACACGTTGATGTGGAAgttcttcatcccatctccgacggagatacaatcgtctc
cggtggagatgaaagagttaaggatcttgactccgtcacttcttcccaaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTTCATCCCATCTCCGACGGAGATACAATCGTCTCCGGTGGAGATGAAAGAGTTAAGGATC
TTGACTCCGTCACTTCTTCCCAAATGGATTCCATCAGTGTTGGGACTGTCTTCTGGGGCGACGA
TCTTGATGTTATTCATGGTCATGTTCTTGGCTCCCAACACGTTGATGTGGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.242591478
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020