Plant Circular RNA Database

Detail information of Os06g0152300_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os06g0152300_circ_g.1
					
						ID in PlantcircBase
						osa_circ_029709
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 2700705-2703861  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0152300						
					
						Parent gene annotation
						
							Similar to Hexaprenyldihydroxybenzoate methyltransferase, mitoch
ondrial precursor (EC 2.1.1.114) (Dihydroxyhexaprenylbenzoate me
thyltransferase) (3,4- dihydroxy-5-hexaprenylbenzoate methyltran
sferase) (DHHB methyltransferase) (DHHB-MT) (DHHB-MTase). (Os06t
0152300-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0152300_circ_ag.1 Os06g0152300_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0152300-01:6

General Information
CircRNA Name	Os06g0152300_circ_g.1
ID in PlantcircBase	osa_circ_029709
Alias	NA
Organism	Oryza sativa
Position	chr6: 2700705-2703861 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0152300
Parent gene annotation	Similar to Hexaprenyldihydroxybenzoate methyltransferase, mitoch ondrial precursor (EC 2.1.1.114) (Dihydroxyhexaprenylbenzoate me thyltransferase) (3,4- dihydroxy-5-hexaprenylbenzoate methyltran sferase) (DHHB methyltransferase) (DHHB-MT) (DHHB-MTase). (Os06t 0152300-01)
Parent gene strand	+
Alternative splicing	Os06g0152300_circ_ag.1 Os06g0152300_circ_g.2
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0152300-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTTGACAGTTCCTAATGGGGCCACTGTGATTTCTACAATCAACCGCTCAATGAGGGCATATGCA
ACTGCAATAGTCGCTGCGGAGTATATTCTTAATTGGgtgggattctgaaggtccattcaagccg
ttgcatctgatgaatccaactcgactgtcttttatccggtccactctctgtagacatttcaggt
acagttcc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTGGGATTCTGAAGGTCCATTCAAGCCGTTGCATCTGATGAATCCAACTCGACTGTCTTTTATC
CGGTCCACTCTCTGTAGACATTTCAGGTACAGTTCCTCAGTCATTGTATTCATTTGTGGTTGTG
ATTATCACTGGTAAACCTGAATAAGTAAAGACAGGACATAGTGTCAACTCTTGTTTTGCCCCCT
AACCATGTGTGTTCACTCTGCTAGGCGGGATCCAAATTCTTCTAAACCACTTGAAGGCCTTAAA
GTTATTGATGTTGGATGTGGGGGTGGCATTCTCTCAGAGGTACCATCATTTTTTTCTTATAATC
TGCTACTTTCTGACACTAAAATATATTGAACTGTGATCTATGTGATACTTACATAAAGGGAGAA
TGATATAGGTTCATGTAGGTGCGCCATATAGAAATGGGTATCATATGTGTGCTCGCGTCTTGCT
TATCATATGCTTTTTGTGACATGTGCATATTGTAATTTGTAACTAATCATATCCAGGACTTTGG
GAACAGGGACATACCATTCATCTACATGATATGATAGCTTAGGAATATGCCACAGCATAAGCTC
ATAATCATGCTAGCCTTGTAGGTTTGAATTTATTTTAACCTCTAACAACCATCTTTGAATATTT
TGACTTACTAACCTCTATATTCTATATTGGCTTGTCCGGAATCAACCAAACTCCCAAGTATTAA
TCATATTCTCCTTTCGTAATCAAGTTTATAGACGTGGAGTTAGTGCATCTGTTGGCCACTTGTG
CTTATACTTCATGGAGCATTGCTGATGCATAATGCTAGGCAGAAGATGGTTAATTCAGTTTCAG
ACTATGTTTAAATAGATACATCACTTATGCTGCATACCTCGATGTCTTCAGTAATGGCTCAACT
CAGAAACATTGCGTACAGTAAAAATCAATCTGACAATGCTACTGAATAATCTCATAAAATGTGG
AAAGTAGATCCACAGTCCACATGCTGCTTGACTCTAAATTGTTTGTGTTTTTTTACCTCATGTC
AATGTATTCTAAGTGTTGCTGTGCATTTGTGGGCTGTAACATATGCTTTGTTCTATTGTTTGAT
TCACTGGACTAATTGCATGCTTATATGGCAGCCTCTTGCTCGGATGGGAGCTACAGTTACTGGA
ATTGATGCTGTTGACAAAAATATAAAGATTGCACGTGTCCATGCTGTATGTATAAGATTATCTA
GTCATCTTAATATATTTATTAGATAGGCACACATTTGTTTCTCTCTTGATATATTAAAACAAAG
TTATACTACTAAGGTTTAACTTACTGGATTACTCTGGCGTCCTTAAGAAGTTATATTATGATGA
TGTAACACTACACAATACACATAATGCTAAATGGAGCTTCAAATTTGTTTAGTTGTTCTCATCA
TATTGCATTGTATGGTCATCATATATATGATATTCATACTTTGAGGACTGATGATACCCATATC
CTTTTCGTTAACTTTTGGTTATGATCTCATAAAGGCAGAAATGCCCAAGTAGACTCAATAATTT
TATTATCTTTCCGCCAATGATTTTTTTTTTTTAAAAATTTTGTTTTCACATTCACAGGCATCCG
ATCCATCAACTGCTTCCATAGAATATTTCTGCACAACAGCTGGTCTCTCTCTCTCTCTCTCTCT
AATGCTGCATTTGTACTTCCTGTCAGTTTAATCATATTGCTACTAATATATAAGTTTTAGTTAA
AAAATGACTTGCTTGACCATTATTTTCTTTCAAGCAAACTAGCTTAGTGCCTACTTTGTGATGT
ACGAGAAATAAATATACCCCGTCTAGTCATGATTGGTTGTCCTAAACATCATATATTCAAGACT
GGATGTAGTACTATAATAATCTAAAGTAAAAAAAGAAGAGCAAAAACTGATTATCCTCAAATCT
AAATATTTTTTACATGTCCATATGGGATTAGATAATCACCTAGCATATGCAATATTTGCCTTCC
TTCCTTTTTTTTAATATAAAAAAGTAGAAATATGTAATGTCTATATATGTAGCAGGGAAGATCC
TGAAAAATGAGGTCGTATTAGAACACACCATCACTCCCCAACGCCTACTTTTATAAGAGCCGTG
AATGAAGACTAAAAGATTGGCAGAGAAACTGGATGCATTTATCCACTCATAAGAGTGTACATTT
GCTTCTACTTTTTTCTTTCTTTTTTCATTTCACCTTTATGAACTATAGTTTATCCTTTCAAATA
ATATATCTAGCCTGCCGATCTGCTCACATGTAAATAAGACTGTGTCGTTCTTGGGAAACATTGG
CAGCACACATTTTCTACAGCGGTCTAATGCAGCTAGCCTCCCAATAATTATCATAACAAATTAA
CATTACTAAAGGAAGAAAAAAAATCCCAGTTTCTGTAAGAACAAATTTAGCATTCAAAAGATTT
TTCTCTCTTGATTGTGACCAAAACCAAACTTATGTGAATATTGTTCTTGTGCAGAGGATTTGGT
GAAAGAGAACAAACAATTTGATGCTGTGATTTCTCTTGAGGTATACACATTTTCATCCCATCTA
TGCCCTTCCTGTATGTCAAACAAGAAGCTTATTTATTGTGGAAGGCTGCAGAATCTGGAATTCA
GAGATGCCTCGTCAATCTCTGATTGGAGAGCCTTTTTAATGTTATATTAGACAATGCTTTGGTT
GTTCTGTTCTTGTAAATTATATAGCTTTCCATGCGTGCTTGCTAGTTCCTCTGATTATATTACT
AATTTGCTGCAATTGATCCCCGCAAAAATAAAAATAAAAATAAAATTGCTTCACTTGATAAGAA
CTGATCTATTTCATGTACTCATAATCCAAATTTCGGGAGTCATGTATGGAATATCTGGAAGACC
TATGTAGCTTACAGCAGAATATCGTACAGATGCTGCATGTTGTTCTTTAACCTTTCTTGATGAA
AAATAATGTATTGCTGTGCGCCTGTGCCATCATGAGTGCAGACTAACCTTAATATACTTTCAGG
TGATCGAGCATGTGGCTAATCCCTCGGGGTTCTGTGAATCTTTGTCAGCTTTGACAGTTCCTAA
TGGGGCCACTGTGATTTCTACAATCAACCGCTCAATGAGGGCATATGCAACTGCAATAGTCGCT
GCGGAGTATATTCTTAATTGG
						
					

			
		

Sequences
Splice junction sequence	TTTGACAGTTCCTAATGGGGCCACTGTGATTTCTACAATCAACCGCTCAATGAGGGCATATGCA ACTGCAATAGTCGCTGCGGAGTATATTCTTAATTGGgtgggattctgaaggtccattcaagccg ttgcatctgatgaatccaactcgactgtcttttatccggtccactctctgtagacatttcaggt acagttcc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTGGGATTCTGAAGGTCCATTCAAGCCGTTGCATCTGATGAATCCAACTCGACTGTCTTTTATC CGGTCCACTCTCTGTAGACATTTCAGGTACAGTTCCTCAGTCATTGTATTCATTTGTGGTTGTG ATTATCACTGGTAAACCTGAATAAGTAAAGACAGGACATAGTGTCAACTCTTGTTTTGCCCCCT AACCATGTGTGTTCACTCTGCTAGGCGGGATCCAAATTCTTCTAAACCACTTGAAGGCCTTAAA GTTATTGATGTTGGATGTGGGGGTGGCATTCTCTCAGAGGTACCATCATTTTTTTCTTATAATC TGCTACTTTCTGACACTAAAATATATTGAACTGTGATCTATGTGATACTTACATAAAGGGAGAA TGATATAGGTTCATGTAGGTGCGCCATATAGAAATGGGTATCATATGTGTGCTCGCGTCTTGCT TATCATATGCTTTTTGTGACATGTGCATATTGTAATTTGTAACTAATCATATCCAGGACTTTGG GAACAGGGACATACCATTCATCTACATGATATGATAGCTTAGGAATATGCCACAGCATAAGCTC ATAATCATGCTAGCCTTGTAGGTTTGAATTTATTTTAACCTCTAACAACCATCTTTGAATATTT TGACTTACTAACCTCTATATTCTATATTGGCTTGTCCGGAATCAACCAAACTCCCAAGTATTAA TCATATTCTCCTTTCGTAATCAAGTTTATAGACGTGGAGTTAGTGCATCTGTTGGCCACTTGTG CTTATACTTCATGGAGCATTGCTGATGCATAATGCTAGGCAGAAGATGGTTAATTCAGTTTCAG ACTATGTTTAAATAGATACATCACTTATGCTGCATACCTCGATGTCTTCAGTAATGGCTCAACT CAGAAACATTGCGTACAGTAAAAATCAATCTGACAATGCTACTGAATAATCTCATAAAATGTGG AAAGTAGATCCACAGTCCACATGCTGCTTGACTCTAAATTGTTTGTGTTTTTTTACCTCATGTC AATGTATTCTAAGTGTTGCTGTGCATTTGTGGGCTGTAACATATGCTTTGTTCTATTGTTTGAT TCACTGGACTAATTGCATGCTTATATGGCAGCCTCTTGCTCGGATGGGAGCTACAGTTACTGGA ATTGATGCTGTTGACAAAAATATAAAGATTGCACGTGTCCATGCTGTATGTATAAGATTATCTA GTCATCTTAATATATTTATTAGATAGGCACACATTTGTTTCTCTCTTGATATATTAAAACAAAG TTATACTACTAAGGTTTAACTTACTGGATTACTCTGGCGTCCTTAAGAAGTTATATTATGATGA TGTAACACTACACAATACACATAATGCTAAATGGAGCTTCAAATTTGTTTAGTTGTTCTCATCA TATTGCATTGTATGGTCATCATATATATGATATTCATACTTTGAGGACTGATGATACCCATATC CTTTTCGTTAACTTTTGGTTATGATCTCATAAAGGCAGAAATGCCCAAGTAGACTCAATAATTT TATTATCTTTCCGCCAATGATTTTTTTTTTTTAAAAATTTTGTTTTCACATTCACAGGCATCCG ATCCATCAACTGCTTCCATAGAATATTTCTGCACAACAGCTGGTCTCTCTCTCTCTCTCTCTCT AATGCTGCATTTGTACTTCCTGTCAGTTTAATCATATTGCTACTAATATATAAGTTTTAGTTAA AAAATGACTTGCTTGACCATTATTTTCTTTCAAGCAAACTAGCTTAGTGCCTACTTTGTGATGT ACGAGAAATAAATATACCCCGTCTAGTCATGATTGGTTGTCCTAAACATCATATATTCAAGACT GGATGTAGTACTATAATAATCTAAAGTAAAAAAAGAAGAGCAAAAACTGATTATCCTCAAATCT AAATATTTTTTACATGTCCATATGGGATTAGATAATCACCTAGCATATGCAATATTTGCCTTCC TTCCTTTTTTTTAATATAAAAAAGTAGAAATATGTAATGTCTATATATGTAGCAGGGAAGATCC TGAAAAATGAGGTCGTATTAGAACACACCATCACTCCCCAACGCCTACTTTTATAAGAGCCGTG AATGAAGACTAAAAGATTGGCAGAGAAACTGGATGCATTTATCCACTCATAAGAGTGTACATTT GCTTCTACTTTTTTCTTTCTTTTTTCATTTCACCTTTATGAACTATAGTTTATCCTTTCAAATA ATATATCTAGCCTGCCGATCTGCTCACATGTAAATAAGACTGTGTCGTTCTTGGGAAACATTGG CAGCACACATTTTCTACAGCGGTCTAATGCAGCTAGCCTCCCAATAATTATCATAACAAATTAA CATTACTAAAGGAAGAAAAAAAATCCCAGTTTCTGTAAGAACAAATTTAGCATTCAAAAGATTT TTCTCTCTTGATTGTGACCAAAACCAAACTTATGTGAATATTGTTCTTGTGCAGAGGATTTGGT GAAAGAGAACAAACAATTTGATGCTGTGATTTCTCTTGAGGTATACACATTTTCATCCCATCTA TGCCCTTCCTGTATGTCAAACAAGAAGCTTATTTATTGTGGAAGGCTGCAGAATCTGGAATTCA GAGATGCCTCGTCAATCTCTGATTGGAGAGCCTTTTTAATGTTATATTAGACAATGCTTTGGTT GTTCTGTTCTTGTAAATTATATAGCTTTCCATGCGTGCTTGCTAGTTCCTCTGATTATATTACT AATTTGCTGCAATTGATCCCCGCAAAAATAAAAATAAAAATAAAATTGCTTCACTTGATAAGAA CTGATCTATTTCATGTACTCATAATCCAAATTTCGGGAGTCATGTATGGAATATCTGGAAGACC TATGTAGCTTACAGCAGAATATCGTACAGATGCTGCATGTTGTTCTTTAACCTTTCTTGATGAA AAATAATGTATTGCTGTGCGCCTGTGCCATCATGAGTGCAGACTAACCTTAATATACTTTCAGG TGATCGAGCATGTGGCTAATCCCTCGGGGTTCTGTGAATCTTTGTCAGCTTTGACAGTTCCTAA TGGGGCCACTGTGATTTCTACAATCAACCGCTCAATGAGGGCATATGCAACTGCAATAGTCGCT GCGGAGTATATTCTTAATTGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.101291812

Conservation Information
Conserved circRNAs	NA
PMCS	0.101291812

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							2700743-2700713(+)
2700791-2703856(-)
2702325-2703810(-)
2700726-2703810(-)
						
						Potential amino acid sequence
						
							MNPTRLSFIRSTLCRHFRRDPNSSKPLEGLKVIDVGCGGGILSEPLARMGATVTGIDAVDKNIK
IARVHAASDPSTASIEYFCTTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSALTVPNGAT
VISTINRSMRAYATAIVAAEYILNWVGF*(+)
MSTESGPDKRQSSWIHQMQRLEWTFRIPPN*(-)
MEAVDGSDAAWTRAIFIFLSTASIPVTVAPIRARGSERMPPPHPTSITLRPSSGLEEFGSRLKC
LQRVDRIKDSRVGFIRCNGLNGPSESHPIKNILRSDYCSCICPH*(-)
MDLQNPTQLRIYSAATIAVAYALIERLIVEITVAPLGTVKADKDSQNPEGLATCSITSREITAS
NCLFSFTKSSAVVQKYSMEAVDGSDAAWTRAIFIFLSTASIPVTVAPIRARGSERMPPPHPTSI
TLRPSSGLEEFGSRLKCLQRVDRIKDSRVGFIRCNGLNGPSESHPIKNILRSDYCSCICPH*(-
)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	2700743-2700713(+) 2700791-2703856(-) 2702325-2703810(-) 2700726-2703810(-)
Potential amino acid sequence	MNPTRLSFIRSTLCRHFRRDPNSSKPLEGLKVIDVGCGGGILSEPLARMGATVTGIDAVDKNIK IARVHAASDPSTASIEYFCTTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSALTVPNGAT VISTINRSMRAYATAIVAAEYILNWVGF(+) MSTESGPDKRQSSWIHQMQRLEWTFRIPPN(-) MEAVDGSDAAWTRAIFIFLSTASIPVTVAPIRARGSERMPPPHPTSITLRPSSGLEEFGSRLKC LQRVDRIKDSRVGFIRCNGLNGPSESHPIKNILRSDYCSCICPH(-) MDLQNPTQLRIYSAATIAVAYALIERLIVEITVAPLGTVKADKDSQNPEGLATCSITSREITAS NCLFSFTKSSAVVQKYSMEAVDGSDAAWTRAIFIFLSTASIPVTVAPIRARGSERMPPPHPTSI TLRPSSGLEEFGSRLKCLQRVDRIKDSRVGFIRCNGLNGPSESHPIKNILRSDYCSCICPH(- )
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0152300_circ_g.1

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