Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d020233_circ_g.1 |
ID in PlantcircBase | zma_circ_009327 |
Alias | Zm07circ00048 |
Organism | Zea mays |
Position | chr7: 101487736-101488672 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d020233 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d020233_T001:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.151525114 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
101487757-101487871(+) 101487969-101488601(-) 101487848-101488591(-) 101487916-101488578(-) |
Potential amino acid sequence |
MAAAEARAAWQRAANRCLVQEDAKRAPKLACCPPSLRPHDTSDGNPPSPQDLHAPMFMPINWNL MNSSMPMETQWWLQLQPSFGCQTALAREHLNYVGGDAAKGMEGLAPVSKLEDVQAKTVDPFEPP WIVSTTLMKQTPDTGSEELKNLASYTPASLKCKGNANKCIYEDKEFTEFKAFDPLFPNKPQKEH CEMHAPWEETKKSQPWWQVADVDGLASLVAERAMENIVNNDLPRPTQTVRVHGPQVKGPENKDD YGMSVVSGGQEPDPVHDTMECSYSVSSTTNDMNSSDGGRWQHHERNNVSGLVACESDGGRRSEG CLATCCQPLPGPGGCQASSQAGMLPTVPATA*(+) MGILEFIRFQLMGINIGAWRSCGLGGFPSLVSCGRRDGGQHASLGARLASSWTRQRLAARCQAA LASAAAITLTCYQPGHIISFVVLPTSPVRRIHVIGGA*(-) MPAWELAWHPPGPGSGWQHVARQPSLRRPPSLSHATNPDTLFLSWCCQRPPSEEFMSLVVLETL *(-) MEILRTRRISIARVMRSQGRWAACQLGSSLGILLDQAAVGSTLPGSPRFGGRHHSHMLPTRTHY FFRGAANVPRQKNSCHWWCLKHCSCTP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |