Detail information of Os01g0700100_circ_g.3


General Information
CircRNA Name Os01g0700100_circ_g.3
ID in PlantcircBase osa_circ_003526
Alias NA
Organism Oryza sativa
Position chr1: 28976300-28976693  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0700100
Parent gene annotation MtN3 and saliva related transmembrane protein family protein. (O
s01t0700100-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0700100-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCA
TTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATatgaagatcatagggctcttggtgctgg
tagtttgcgggtttgcgctagtttcacatgcgagcgtctttttctttgatcaaccgcttcggca
gcagtttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGCGCTAGTTTCACATGCGAGCG
TCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGAT
CTCCATGTTCGCTTCTCCGTTAGCTGTCATGGTACGTATGCCTCTCGATCAAGCTGAGCTCTTG
ATCAATATCATCTCCGGCATGTTTAATAGAACTGAGGGATCTCACTAACCTTTGCTTGCTCCAT
CCATCCTTGTGTCTACAGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATGCCGTTCTATC
TGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTT
CTTCATTTAT
Conservation Information
Conserved circRNAs osi_circ_002332*
PMCS 0.09919632
Functional Information
Coding potential Y
Potential coding position 28976301-28976690(+)
Potential amino acid sequence MKIIGLLVLVVCGFALVSHASVFFFDQPLRQQFVGAVSMASLISMFASPLAVMGVVIRSESVEF
MPFYLSLSTFLMSASFALYGLLLRDFFIYMKIIGLLVLVVCGFALVSHASVFFFDQPLRQQFVG
AVSMASLISMFASPLAVMGVVIRSESVEFMPFYLSLSTFLMSASFALYGLLLRDFFIYMKIIGL
LVLVVCGFALVSHASVFFFDQPLRQQFVGAVSMASLISMFASPLAVMGVVIRSESVEFMPFYLS
LSTFLMSASFALYGLLLRDFFIYMKIIGLLVLVVCGFALVSHASVFFFDQPLRQQFVGAVSMAS
LISMFASPLAVMGVVIRSESVEFMPFYLSLSTFLMSASFALYGLLLRDFFIY(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017