Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018884_circ_g.2 |
ID in PlantcircBase | zma_circ_009220 |
Alias | Zm07circ00010, zma_circ_0002346, GRMZM2G074479_C1 |
Organism | Zea mays |
Position | chr7: 8347883-8348184 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d018884 |
Parent gene annotation |
Ubiquitin-conjugating enzyme E2 2 |
Parent gene strand | - |
Alternative splicing | Zm00001d018884_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d018884_T015:2 Zm00001d018884_T012:2 Zm00001d018884_T001:1 Zm00001d018884_T016:2 Zm00001d018884_T011:2 Zm00001d018884_T004:2 Zm00001d018884_T023:2 Zm00001d018884_T009:2 Zm00001d018884_T006:2 Zm00001d018884_T002:2 Zm00001d018884_T003:2 Zm00001d018884_T007:2 Zm00001d018884_T008:2 Zm00001d018884_T005:2 Zm00001d018884_T010:2 Zm00001d018884_T013:2 Zm00001d018884_T021:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.460825147 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8348103-8348102(+) 8348112-8347896(-) |
Potential amino acid sequence |
MKHPRDKSNSWWLVWVIFCKLQGKLERAWIEVKIAATSYIGLHWFCRISKQMLPSAYIFG*(+) MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQARSSLPCSLQKITQTSHQLFDLSLGCFIQ IYMLMEASVWISYRTSGVLYMMLLQF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |