Detail information of BGIOSGA016526_circ_igg.1


General Information
CircRNA Name BGIOSGA016526_circ_igg.1
ID in PlantcircBase osi_circ_005515
Alias 4:20946838|20947169
Organism Oryza sativa ssp. indica
Position chr4: 20946838-20947169  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACCGACGCGCCGCCGTACCAGCTCTACGCCGAGCGGAGCGTCTGCGGCAAGATCAGCACGGC
CACCGCCGCCGCCGAGGAGGAGAGCTGAGCTGAGCActgcaggcgtggggcggcctcatggcgg
ccggccacgactacttcgagcggagcaacgtcgacatcttcagcggccgcgggccatgcctggg
agcccccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAGGCGTGGGGCGGCCTCATGGCGGCCGGCCACGACTACTTCGAGCGGAGCAACGTCGACA
TCTTCAGCGGCCGCGGGCCATGCCTGGGAGCCCCCGTCTGCCGCATGAAGCTCGTCTCCAACGG
CGCCGGCGAGCACCACGGGTGGTTCTGCAAGTCCGTCGAGGTCACCGTCGCCGGTCCCCACGCC
AGGTGCAACAGGGCGGCGTTCGACGTCCAGCAGTGGCTCGCCACCGACGCGCCGCCGTACCAGC
TCTACGCCGAGCGGAGCGTCTGCGGCAAGATCAGCACGGCCACCGCCGCCGCCGAGGAGGAGAG
CTGAGCTGAGCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021