Detail information of Os09g0512950_circ_g.3


General Information
CircRNA Name Os09g0512950_circ_g.3
ID in PlantcircBase osa_circ_039806
Alias Os_ciR3227
Organism Oryza sativa
Position chr9: 19962209-19962343  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os09g0512950
Parent gene annotation Hypothetical gene. (Os09t0512950-01)
Parent gene strand -
Alternative splicing Os09g0512950_circ_g.2
Support reads 4
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0513000-01:1
Os09t0512950-01:1
Os09t0513000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACACAAGTCATGCAAAACCCTCAATTCATGTCAATGGCAGAACGTCTTGGGAATACTCTTATG
CAGaagagtgctcatgtgaccggggaacagggtggccctgcattggatcctcagcagtacatgg
aaacaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGAGTGCTCATGTGACCGGGGAACAGGGTGGCCCTGCATTGGATCCTCAGCAGTACATGGAAA
CAATGACACAAGTCATGCAAAACCCTCAATTCATGTCAATGGCAGAACGTCTTGGGAATACTCT
TATGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.341064938
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015