Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT4G14200_circ_g.3 |
ID in PlantcircBase | ath_circ_030859 |
Alias | Ath_circ_FC2641 |
Organism | Arabidpsis thaliana |
Position | chr4: 8187800-8188263 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ |
Parent gene | AT4G14200 |
Parent gene annotation |
Pentatricopeptide repeat (PPR) superfamily protein |
Parent gene strand | - |
Alternative splicing | AT4G14200_circ_g.1 AT4G14200_circ_g.2 AT4G14200_circ_g.4 |
Support reads | 28 |
Tissues | inflorescences, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT4G14200.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.529073527 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8188133-8187802(-) |
Potential amino acid sequence |
MKKENLDLPEEHSLDDEQKPPTPSPTVVEKSAPTVVEKAANERIGDVSEEDVFTDAVCEFSRSD SFKEETATNFPAKGTENPGGGKNHVCTKCGWSYSNPHPSAKNRRAHKKICGTIKGFEIFDSEMK KENLDLPEEHSLDDEQKPPTPSPTVVEKSAPTVVEKAANERIGDVSEEDVFTDAVCEFSRSDSF KEETATNFPAKGTENPGGGKNHVCTKCGWSYSNPHPSAKNRRAHKKICGTIKGFEIFDSEMKKE NLDLPEEHSLDDEQKPPTPSPTVVEKSAPTVVEKAANERIGDVSEEDVFTDAVCEFSRSDSFKE ETATNFPAKGTENPGGGKNHVCTKCGWSYSNPHPSAKNRRAHKKICGTIKGFEIFDSEMKKENL DLPEEHSLDDEQKPPTPSPTVVEKSAPTVVEKAANERIGDVSEEDVFTDAVCEFSRSDSFKEET ATNFPAKGTENP(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |