Detail information of BGIOSGA026104_circ_g.6


General Information
CircRNA Name BGIOSGA026104_circ_g.6
ID in PlantcircBase osi_circ_007323
Alias 7:23057419|23057688
Organism Oryza sativa ssp. indica
Position chr7: 23057419-23057688  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA026104
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA026104_circ_g.3 BGIOSGA026104_circ_g.4 BGIOSGA026104_circ_g.5 BGIOSGA026104_circ_g.7 BGIOSGA026104_circ_g.8 BGIOSGA026104_circ_g.9 BGIOSGA026104_circ_g.10 BGIOSGA026104_circ_g.11
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA026104-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGAACGGTGAGATTGGAGAGGAAGATGAGGAGAGATTGGAGGATGATAGGGTTTATGAGGAG
GGGAATGATGACGACGAGGAGGATGTGGATGATGAGgaggaagacggcatcgatgaagaggatg
aggaggaggacgaggatgaagaggaggttgaggatgatggtgaggaggctgagccagagagcag
cgggaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGAAGACGGCATCGATGAAGAGGATGAGGAGGAGGACGAGGATGAAGAGGAGGTTGAGGATG
ATGGTGAGGAGGCTGAGCCAGAGAGCAGCGGGAGGGTCGCTTTGGCGGTGGGGGACGTTGGAGA
AGAGATTGATGGGCATGAGCACGGAGAGGGGGAAGATGAGGATGAGAACGGTGAGATTGGAGAG
GAAGATGAGGAGAGATTGGAGGATGATAGGGTTTATGAGGAGGGGAATGATGACGACGAGGAGG
ATGTGGATGATGAG
Conservation Information
Conserved circRNAs osa_circ_034698*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR414
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021