Detail information of BGIOSGA033142_circ_g.1


General Information
CircRNA Name BGIOSGA033142_circ_g.1
ID in PlantcircBase osi_circ_008527
Alias Chr10:19808483_19809268(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16882578-16883363  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033142
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA033142-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGGTGAGGATGGCCGATGTCGTGGAGGCCGCTAGCCTCGCGTCGAGCGGGCAGCCGTTCGAG
GTGGCGTACTACCCGAGGGCTAGCACCCCGGATTTTggcggggcggcggcggcagccgcggagc
tggggccgcgcgcgctcccgccgctcgtgctctgccgcgtcgaaggggtccagttcctggccga
tcgggact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCGGGGCGGCGGCGGCAGCCGCGGAGCTGGGGCCGCGCGCGCTCCCGCCGCTCGTGCTCTGCC
GCGTCGAAGGGGTCCAGTTCCTGGCCGATCGGGACTCCGACGAGGTGTACGCCAAGATCCGCCT
CGCGCCGGTCGCCCCCGGGGAGGCCGAGTTCCGGGAGCCCGACGAGCTCTGCCCGCTCGGCGCC
GCCGGCGACGCGGCGGAGCCGTCGCCGGAAAAGCCGACCTCGTTCGCCAAGACGCTCACGCAGT
CCGACGCCAACAACGGCGGCGGCTTCTCGGTGCCCCGCTACTGCGCCGAGACCATCTTCCCCAA
GCTGGACTACAGGGCCGACCCACCGGTGCAGACGGTGCTCGCCAAGGACGTCCACGGCGTGGTC
TGGAAGTTCCGCCACATCTACCGCGGCACGCCGCGCCGGCATTTGCTCACCACCGGGTGGAGCA
CGTTCGTGAACCAGAAGAAGCTCGTCGCGGGGGACTCGATCGTGTTCCTGCGCACCAGGCACGG
GGAGCTCTGCGTCGGGATACGGCGGGCGAAGCGGATGGCGTGCGGGGGGATGGAGTGCATGTCG
GGGTGGAACGCGCCGGGCTATGGCGGCGGCGGCTTCTCGGCGTTCTTGAAGGAGGAGGAGAGTA
AGCTGATGAAGGGCCATGGTGGTGGTGGGTACATGAAGGGCAAGGGGAAGGTGAGGATGGCCGA
TGTCGTGGAGGCCGCTAGCCTCGCGTCGAGCGGGCAGCCGTTCGAGGTGGCGTACTACCCGAGG
GCTAGCACCCCGGATTTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021