Detail information of AT2G02820_circ_g.2


General Information
CircRNA Name AT2G02820_circ_g.2
ID in PlantcircBase ath_circ_012615
Alias NA
Organism Arabidpsis thaliana
Position chr2: 805617-806484  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G02820
Parent gene annotation Transcription factor MYB88
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02820.3:4
AT2G02820.2:4
AT2G02820.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTCATTCACCATTAAAGCTTGAATCTCTTCGTTTCAATATACCTTCCTGAGACCACTTTTGC
TATCTCAGTCCACCTATTCCCAAACAATCTCTGTGCcttccaggcattctccatgctttggtct
gtgttgtctgcattaactttctgggccaatgaactgagaagttcagcttgttgcatcaaagctg
tcaccttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCAGGCATTCTCCATGCTTTGGTCTGTGTTGTCTGCATTAACTTTCTGGGCCAATGAACTG
AGAAGTTCAGCTTGTTGCATCAAAGCTGTCACCTTTGAATCATCCTTCTTAAGAAACACCTCTT
GGTTACTTTTATCCTCACCTATTTAGCAGAAACACAACTTAATAGAATAAGACTCTCTATGTTT
GCAACTTAATAGAAACACAACATGAAGAAGAATTTTGCGCACCGTCACTCTCTTTCACATTGCC
TATTTGTTTCTGCTCCTCTGTACCATCACTACTTGTGGCATTGTGGGCTACTACAGAAAATGGA
TGTCTTCTCTGTTGATTCATAGTCGATTCAACCTTTATATGTGATCTATCCCCATAGCTCTTAA
TCTCTGTAAGATTTGGAATATGACTTCTCCTGGATAATGAACATTACCATTTACAACTATAAGT
CAATATAACAGTTCCAAAAGCATTCTTCTTTGGATCAATCAATGGTCCCCAGAAGATAAACAAA
CACAAGGTTCTCTCACCTCATTTTCTTAGTAAGAGGAGATTCACTTTCGGCTTTTAGCGGTGTA
CTAATACCATCTGGGAACAACAGTCTCTTGTTGTCTGAGTTAACACAACAAGCAATCCTGTTCT
CTTTCGCCATAGCTTCATGCTTAGCCCTCTTCTTGCACAGTGTAGTAAACCTGTTCTTCACAGC
ATTATCCGTTCTACACAAACAATACAGAACAAAGAATGAATTCTCAAATTTCATTTTCATAATA
ACTTCATTCACCATTAAAGCTTGAATCTCTTCGTTTCAATATACCTTCCTGAGACCACTTTTGC
TATCTCAGTCCACCTATTCCCAAACAATCTCTGTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.137982248
Functional Information
Coding potential Y
Potential coding position 806267-805619(-)
Potential amino acid sequence MAKENRIACCVNSDNKRLLFPDGISTPLKAESESPLTKKMRRSHIPNLTEIKSYGDRSHIKVES
TMNQQRRHPFSVVAHNATSSDGTEEQKQIGNVKESDGEDKSNQEVFLKKDDSKVTALMQQAELL
SSLAQKVNADNTDQSMENAWKAQRLFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKHEAMAK
ENRIACCVNSDNKRLLFPDGISTPLKAESESPLTKKMRRSHIPNLTEIKSYGDRSHIKVESTMN
QQRRHPFSVVAHNATSSDGTEEQKQIGNVKESDGEDKSNQEVFLKKDDSKVTALMQQAELLSSL
AQKVNADNTDQSMENAWKAQRLFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKHEAMAKENR
IACCVNSDNKRLLFPDGISTPLKAESESPLTKKMRRSHIPNLTEIKSYGDRSHIKVESTMNQQR
RHPFSVVAHNATSSDGTEEQKQIGNVKESDGEDKSNQEVFLKKDDSKVTALMQQAELLSSLAQK
VNADNTDQSMENAWKAQRLFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKHEAMAKENRIAC
CVNSDNKRLLFPDGISTPLKAESESPLTKKMRRSHIPNLTEIKSYGDRSHIKVESTMNQQRRHP
FSVVAHNATSSDGTEEQKQIGNVKESDGEDKSNQEVFLKKDDSKVTALMQQAELLSSLAQKVNA
DNTDQSMENAWK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017