Detail information of EPlOSAG00000011372_circ_ig.1


General Information
CircRNA Name EPlOSAG00000011372_circ_ig.1
ID in PlantcircBase osa_circ_010921
Alias Os_ciR1060
Organism Oryza sativa
Position chr12: 7452959-7453682  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRI, circseq_cup, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os12g0236225_circ_igg.1 Os12g0236225_circ_g.1 Os12g0236225_circ_g.2 Os12g0236225_circ_g.3 Os12g0236225_circ_g.4
Support reads 25/204/9
Tissues root/root/shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCCAGCCGCGCCATGCGCGCTGCCTCTGCCCGGCTGGAGGTTGAAGACGACCTCCCTCAGCCG
AGCCGATGACAGGATGGGCCCACCTCCTGTTTTTCCctcttattgagagggcctgaacctgtct
aaatcctttgtctccgcatccatccactcttaggtctcgtgcgctacccccttttattattgcc
gaattcat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 192
Transcript exons: 7452959-7453051,7453584-7453682
CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTGCCGCCCAGCCGCGCCATGCGCGCTGCCTCTGCCCGGCT
GGAGGTTGAAGACGACCTCCCTCAGCCGAGCCGATGACAGGATGGGCCCACCTCCTGTTTTTCC

Transcript length: 212
Transcript exons: 7452959-7453047,7453560-7453682
CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTCGGCCTCGCACCATCCCGGCTGCGCCCAGCCGCGCCATG
CGCGCTGCCTCTGCCCGGCTGGAGGTTGAAGACGACCTCCCTCAGCCGAGCCGATGACAGGATG
GGCCCACCTCCTGTTTTTCC

Transcript length: 225
Transcript exons: 7452959-7453048,7453545-7453645,7453649-7453682
CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTGCGGCCGCTTCCGTGCCGGCCTCGCACCATCCCGGCTGC
GCCCAGCCGCGCCATGCGCGCTGCCTCTGCCCGGCTGGAGGTTGAAGACGACCTCCCTCAGCCC
CGATGACAGGATGGGCCCACCTCCTGTTTTTCC

Transcript length: 273
Transcript exons: 7452959-7453143,7453595-7453682
CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTGCCGAATTCATGTTTTGACAGTTGGCACGCCAGGTAGGG
GTGACGTCGAGTTTCCTGTCGAAAAGTGCGATGGAATCAACTTCGTGAGTCACTCGCCATGCGC
GCTGCCTCTGCCCGGCTGGAGGTTGAAGACGACCTCCCTCAGCCGAGCCGATGACAGGATGGGC
CCACCTCCTGTTTTTCC

Transcript length: 273
Transcript exons: 7452959-7453153,7453605-7453682
CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTGCCGAATTCATGTTTTGACAGTTGGCACGCCAGGTAGGG
GTGACGTCGAGTTTCCTGTCGAAAAGTGCGATGGAATCAACTTCGTGAGTCACTCGCTTCATCT
TCGGCCTCTGCCCGGCTGGAGGTTGAAGACGACCTCCCTCAGCCGAGCCGATGACAGGATGGGC
CCACCTCCTGTTTTTCC

Transcript length: 275
Transcript exons: 7452959-7453132,7453582-7453682
CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTGCCGAATTCATGTTTTGACAGTTGGCACGCCAGGTAGGG
GTGACGTCGAGTTTCCTGTCGAAAAGTGCGATGGAATCAACTTCGTCGCCCAGCCGCGCCATGC
GCGCTGCCTCTGCCCGGCTGGAGGTTGAAGACGACCTCCCTCAGCCGAGCCGATGACAGGATGG
GCCCACCTCCTGTTTTTCC

Transcript length: 306
Transcript exons: 7452959-7453178,7453597-7453682
CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTGCCGAATTCATGTTTTGACAGTTGGCACGCCAGGTAGGG
GTGACGTCGAGTTTCCTGTCGAAAAGTGCGATGGAATCAACTTCGTGAGTCACTCGCTTCATCT
TCGCTTTGGGAGATTTTTTGCCTCCTCGTGCGCGCTGCCTCTGCCCGGCTGGAGGTTGAAGACG
ACCTCCCTCAGCCGAGCCGATGACAGGATGGGCCCACCTCCTGTTTTTCC

Transcript length: 309
Transcript exons: 7452959-7453168,7453584-7453682
CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTGCCGAATTCATGTTTTGACAGTTGGCACGCCAGGTAGGG
GTGACGTCGAGTTTCCTGTCGAAAAGTGCGATGGAATCAACTTCGTGAGTCACTCGCTTCATCT
TCGCTTTGGGAGATTTTTCCCAGCCGCGCCATGCGCGCTGCCTCTGCCCGGCTGGAGGTTGAAG
ACGACCTCCCTCAGCCGAGCCGATGACAGGATGGGCCCACCTCCTGTTTTTCC

Transcript length: 331
Transcript exons: 7452959-7453189,7453583-7453682
CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTGCCGAATTCATGTTTTGACAGTTGGCACGCCAGGTAGGG
GTGACGTCGAGTTTCCTGTCGAAAAGTGCGATGGAATCAACTTCGTGAGTCACTCGCTTCATCT
TCGCTTTGGGAGATTTTTTGCCTCCTCGTCACCGAATACGCCCAGCCGCGCCATGCGCGCTGCC
TCTGCCCGGCTGGAGGTTGAAGACGACCTCCCTCAGCCGAGCCGATGACAGGATGGGCCCACCT
CCTGTTTTTCC

Transcript length: 339
Transcript exons: 7452959-7453178,7453564-7453682
CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTGCCGAATTCATGTTTTGACAGTTGGCACGCCAGGTAGGG
GTGACGTCGAGTTTCCTGTCGAAAAGTGCGATGGAATCAACTTCGTGAGTCACTCGCTTCATCT
TCGCTTTGGGAGATTTTTTGCCTCCTCGCTCGCACCATCCCGGCTGCGCCCAGCCGCGCCATGC
GCGCTGCCTCTGCCCGGCTGGAGGTTGAAGACGACCTCCCTCAGCCGAGCCGATGACAGGATGG
GCCCACCTCCTGTTTTTCC

Transcript length: 566
Transcript exons: 7452959-7453682
TCATCTTCGCTTTGGGAGATTTTTTGCCTCCTCGTCACCGAATACTCCAGCAGACTCTCTCTCT
GACTGGGATTCAAACCAGTCGGGGGGCTCAAGGTCACTTCGAGGTGGCGGAAAGACCGGTTGCT
CGGCAGGAACTACTCGCGGTTGCGGGCGTCGACGAAGGCGCGCAGCACGCGAGCGGTGAGGAAG
GCGAGCCGTCGCCACCGGCGGGAGGTCGCCGGAGCCTCGCCACATCTTTCCGGCCGCTTCCGTG
CCGGCCTCGCACCATCCCGGCTGCGCCCAGCCGCGCCATGCGCGCTGCCTCTGCCCGGCTGGAG
GTTGAAGACGACCTCCCTCAGCCGAGCCGATGACAGGATGGGCCCACCTCCTGTTTTTCCCTCT
TATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTCTCGT
GCGCTACCCCCTTTTATTATTGCCGAATTCATGTTTTGACAGTTGGCACGCCAGGTAGGGGTGA
CGTCGAGTTTCCTGTCGAAAAGTGCGATGGAATCAACTTCGTGAGTCACTCGCT

Genomic sequence CTCTTATTGAGAGGGCCTGAACCTGTCTAAATCCTTTGTCTCCGCATCCATCCACTCTTAGGTC
TCGTGCGCTACCCCCTTTTATTATTGCCGAATTCATGTTTTGACAGTTGGCACGCCAGGTAGGG
GTGACGTCGAGTTTCCTGTCGAAAAGTGCGATGGAATCAACTTCGTGAGTCACTCGCTTCATCT
TCGCTTTGGGAGATTTTTTGCCTCCTCGTCACCGAATACTCCAGCAGACTCTCTCTCTGACTGG
GATTCAAACCAGTCGGGGGGCTCAAGGTCACTTCTGTTGAAATTATAAGCACATAATGATTTAA
TTTATTCCATAAATAAATCATGACATTGCAGATGTAAACTAGATTGAACGCATCATTAGATCTA
CACATGTAAACTAAGCAGTAAAACATGAACAGATCAAATATGCGCAACATGTCGAACACGTACC
GAGGTGGCGGAAAGACCGGTTGCTCGGCAGGAACTACTCGCGGTTGCGGGCGTCGACGAAGGCG
CGCAGCACGCGAGCGGTGAGGAAGGCGAGCCGTCGCCACCGGCGGGAGGTCGCCGGAGCCTCGC
CACATCTTTCCGGCCGCTTCCGTGCCGGCCTCGCACCATCCCGGCTGCGCCCAGCCGCGCCATG
CGCGCTGCCTCTGCCCGGCTGGAGGTTGAAGACGACCTCCCTCAGCCGAGCCGATGACAGGATG
GGCCCACCTCCTGTTTTTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.40144893
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA