Detail information of BGIOSGA021229_circ_igg.1


General Information
CircRNA Name BGIOSGA021229_circ_igg.1
ID in PlantcircBase osi_circ_016199
Alias Chr06:13983154_13994469(MH63RS2), Chr06:13983154_13994469(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 17273717-17278595  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA021229_circ_g.2 BGIOSGA021229_circ_g.3 BGIOSGA021229_circ_g.4 BGIOSGA021229_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GG-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCCTTAACTTTACAGCGAGTTCGATGTTCACACGTAAAACCACGTACCCAACTTACAAAACCA
GTCCATGGCAGAATTGTCTCCGATTTTGGCTCATGTcttgttgattggacatatgccaatatat
tttgtagattcatcttcatagcgaatatgcttcaagagattattcagtgcagcgtgtcttaagg
tattaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTTGATTGGACATATGCCAATATATTTTGTAGATTCATCTTCATAGCGAATATGCTTCAAG
AGATTATTCAGTGCAGCGTGTCTTAAGGTATTAAATGGCCAAAGGATCAATATTGGTTCCACAA
CTTTGTTAAGACCAGTCCAAATAACATTTTGTACAAATGATCGCGGATAACGAAGGTCTTCCTG
CAAGCAGAAACAAGGACAGCATATAAAGGTCATGTACATTACTTTTCATTCTACACATAGAAAG
CACAACAAAAGCTAACTTCTTAGACAGAATCAAAAAGGAAGGACAAGAAGAAATATACTTTACA
TCCTAAGATACCAAATTAATTGCTAATCTGAATTCCATCCTTTTTTTCTCCCAAACACAACAGC
CATGCGTTTCATTTCATTAAAGAGAAGAAAAAGCATGCATAACAGAGCTCTTCACAAAGGAACA
CTCTGAAAAAAATGAGTCGCCGAAGCGATGCGCAACAACTCCCAGAGGAGCTAAGCTCCTTAGT
GAGAATCAATCAGGCCAAGAGTTCATGAAGAGCTCTTGCTTTAGCAGTACACCATAATAAATTC
TCCCTTGCCACGGCATCCAATATGACATTAGTACTAGGTGTGGCATTGTTGAAGACGCGGCCAT
CCCAGTATTTCCAAATTTGCCAACCACTAAGATAATCAGAGATTCCATCCCTTTCTTAGTTTCC
TTAGAGACAACTCTGACCACTTGGGGCCACTAGCTAGAGAATCGTCTTGAGGAGGGTTGACGTG
CTCAAACCGCCATGCCTTTCTTTTTCATAATTAGATACCATACTTGACGAGCGAAGACACAAGA
TACATGGATGCCTGTATTATCTCCTCCTGTTGATCACAGAGAGGGCAAACGTCTAGGTGTGACA
TACCAAACTTCTCAAGGCGATCCGATGTCCAACATTGGTTATTCACCACCAACCACAAAAAGAA
CTTACACTTAATGGGCGCCCAAGTCATCCATATTCTCTTTCATGGGGCAAATTTTATCGACCAA
ATGAAATAGGTGTGGTAAGCAGACTTGCTTGTGTAATTTCCTGTCTCCGAAAACTTCCAAGTGT
GTTGGTCAGGGACATCCTGTTGTAGGATCAATCCATCAACCAAGTCCTATAGTTGCAGGTACTC
TACTAACACTTGTACAAAGAGGCTTCCAATAATGTCACAAATCCATCTTCTCTTTGCTAGAGCG
AATTCCATCCTTGAACTTCCTTTCTTCCAATTTTTTCGGGGAATACAAAAAATACTTGCATATC
ATTGCATTAAGAGACAAATCTTTCACTTTTCACCCTTCAGCTATCAAAGCCATTTGTATTCAAC
AATACAATGGTTCTTGAATGGTTTTAACATACAGGCAGCCATGTGAACGGTTCTAGTTTAGGTG
GAACTTAATTTGTCCATATAATTTTTAAAACTATTTAATGAATTAAATATTTATACATTCCATA
ATATCGAAATATACGCCCCAATCATTTTGAAAGGAATAAGATTTTCTAGGATGAGTAGACGTTG
ATGCTGTTAATTGTAATCGGAAAAGGACTAGTTCACAAGTTTGACCATCCATGAAAGACTGAAA
ATCAATCCTAAACATAAAAACTATACAACATTCAAGAACGAACTACTCAAAACCCTGCACTTTC
AAGCAGCTCTATTATAAAATGTGTATGTACTAGCTTACACAAAACTGAAACAGACTACGCCATA
TAAGGTTGAGTCACATGAATTTAGTATTATTAATACAATTCTCAGAGGAGGCATGTAATAAACA
AAATGTAGTTTTCAGTACGACACTTATTTAAGAACAACCAGTTATTCAAAATGCTTTATTATAG
GAAATGGTGATGATATTTGGAGGAAGCAAAATCTTATGTAAATAAACCTTGGCACAATTGTTCC
GAGCATTTTTCCAGTTAATCTCATTATATGGTACACTGTAGAGCTCCTCTCTTATTTCCAATAT
CGTTGGTGTAATTGCCCCAACAAACTTCTTACCATAAAGATAAGCCATTGGCATATAAACCAAA
CGACAGAAGCACCAGAATCGCTCTGTGGAAAAGAATGTTTACATCAGTAAGAAAAATTATTGCA
ACGACAGTCTTATATAATATGCTGTTGAAGAAGCCATAGTTCAGGAATGATGGAAAAGCACCAA
CATGTCCCTTGAGAAAAACGAAATGTACCTGGGTGAATTGGAAGAAAATGTGGTACAAGCCACA
ATTCAGGAATGATGGCATTATTTCCAGACCAATCATACAAACCAATCACCTTCAGAATATATGA
ATAGCTTGCATTAACCCTTTCATCATACAACTTGATAAACTACAGATAATGAAGATAAGTGCGA
ACCAAATAATGGGAACTAATATTTGTAACGACGGATTTCACTGGACAAATAAGGTGAAATGAAT
AGCAAGCTAAAATATGGTAGGTAAAATAAGAACAAGTTACTAGAATGTTATATTATAAATTCAA
TCGTTACTAGATTTATTTAGAGAATTATCTTTTATATTGATTTATTTTATCATGTATTGCTAAA
ACAGGGGCTGAATAGTGCCCTAGCTCCAATAAACATATTAATGTATTTAAAGAAATGGATAGTA
CTAATCGAAATTTATGATTTTATTTATCCCGTGATAATTCGAATGAAACTTGTTTTGATTACAA
AGACCATCCAATTCAAATCGTTTTAACAAAGTTTGATCAGAATGGTAATTTATTAACAAGCTAG
CACATGATGCATACCAAATGTTCAGCTCAAAAGGGTGTTTCCTGGTTGAAATTGATACTCCCTC
CGGTTTTTAATATATGACACCATTTACTTTTGGGCGTACATTTGATAAGCAGACAGTGTACATA
ATGCAGACATCAACACATGAGGTGTTGTCTTGTCTTATATATCGAACCTAGCCAACACGCCTCT
ATCCACGCAATCATATGGAAAATAATAGTATTATTCATTTTTGTATTAATGTCATACCGACAAC
CATATCTTTCCCCACTGTGGTACTGCAGCTGCACTCCCACGGGATATAATCCAAGCACGCCCTT
TGGTTAGTGCATCAATACTCCTCTCCTGACCAAGAAGTCGTAAGGTCACATAGTTTTAAGCAAG
ATCCAAACATGGTACTCGGTCCCAAAACTTGTGTGCCCCAACCGCCATCTTCATTCTACATGGA
TTATATTCCATACAGAATATTCATTTTTTTTCAATGCCATAAGCTAATGAATTTTGAATTTAAA
GAATTACTGTTGGTATGCCTGATGGTTGTAGATATAGCGACATATCTCACGGCGATGTTCAGAT
GAGAGAACAGCATCAAGTGATCCAGTGATATAGAGAGCAAATATCTGAAAGAAATTCATCGGCC
CCACATATAGATCAATTTTGTAATTTAATTTCATGATAAGTATTCAATTGAAACCAAAAATTAA
ATTGAAGTCTATGACAGCTGCTACCATTTAATCTTCCAGGCATAAATCAAATAAATATCCTGTT
GATACAAATGTCATGTCTACTTCAAGTACCATGCGATGAAGTTATGATATAAATATAATTCCTA
AGTCACATGTCTGCTCAGTTCATTCTTCTTAAAAAATAATGGCCCATAGTCACTTACTATTTAT
CCTAGTAATATCCACTAACGCAGTGAAATTCATTTGAAGGAAATGAAGCCTAGCAATGATGAAT
AACGCAATAGAAATGGATATATACCAACATAGGCATAATGAACATAATTCCACTGAAATCGCCA
GGCCAATGTCCATCATGTGCTTGCAGAGAAGAATGTTGAGTAAGAGCCCGCCTCAGTGATGCCA
ATATAATCTGTTCTGTGACTTGAGTACTATCGACAAGTTTACTGGCTGGAACATCCACCTGAAG
GCGATTTTGTTTTGCATACTGTAACAGATGATTACACAATGTGAGAATTTTACGGTGGATTCTA
CAGTTAGCTCGAATTAAACCATAAATTTGTTGGTGAAAAAATAATAATAAAAAAACAACAGAAG
TAAAAAAGTAGCAGTATCTAAAAGTTAGAGCTAGAATTACCATGGGGGTACACAAGAGAATCTG
AATAGGGAAGATGCAACTACTTCTGCGAAGATGTGTGGCTGCAATTGTGGAGACCATTTTTCTA
CATATCTCACTCCTATATGGAGTATTACAGTTCAATGGTTCCACATTTTTTTTGCAATTATCTG
AGCCCCTTTGAGCAAGGGGCCAGATCGGAGCGGCGGCGACAGGGAAAAGGTGTTCCTAGCGCGT
TGTCGATTCGGCTCCGGGAAGAGGTGAAATCAGAACATCGACGTACGAGGAGTCGAGGAACTCA
AACGGCGTCGTCGGCTTGGACAGAGTACTGCCGAGGCGAGTGAGAACTTGAAGGCTCTGGGTGC
CCCGTGAAAACGAGAAGGTGAGAGAGCCTAGCGAAGTGCGGCGCCGGAACGCGGCGGTGGAGCT
CGGCTTGTGGGGGCGCCGGTGCTGGCTCCGCCGAGCCATCAGCGGCGTGAGAGAGGGAGGAGCA
CAGGGCAGTACGGCGAGCCGGCGAGGTCGGCTGGGCAACGCGTCGAGGAAGCTGGCGGCAAGAG
AAGACGAGAGGAGAGAAGGATGGAGGTGGAGGAAGAGCACAGGGGATAGGCTCGGGTCGGGTGG
GCTGTGTAGCCTGTGGGCAGTGAATCCATGTGTTGGGCCGAGGCCGAGAGGGCCTGTGAAAACG
AACAATTCATATGTTTACGGAACTTGGAATAAGTACACTTAAGGTCCTTAACTTTACAGCGAGT
TCGATGTTCACACGTAAAACCACGTACCCAACTTACAAAACCAGTCCATGGCAGAATTGTCTCC
GATTTTGGCTCATGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021