Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G12900_circ_g.5 |
ID in PlantcircBase | ath_circ_002322 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 4392838-4392975 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | circRNA_finder |
Parent gene | AT1G12900 |
Parent gene annotation |
glyceraldehyde 3-phosphate dehydrogenase A subunit 2 |
Parent gene strand | - |
Alternative splicing | AT1G12900_circ_g.1 AT1G12900_circ_g.2 AT1G12900_circ_g.3 AT1G12900_circ_g.4 AT1G12900_circ_g.6 AT1G12900_circ_g.7 AT1G12900_circ_g.8 AT1G12900_circ_g.9 |
Support reads | 4 |
Tissues | whole_plant |
Exon boundary | No-No |
Splicing signals | GT-AG |
Number of exons covered | AT1G12900.5:1 AT1G12900.1:1 AT1G12900.4:1 AT1G12900.3:1 AT1G12900.2:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.245307379 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |