Detail information of AT2G39930_circ_g.6


General Information
CircRNA Name AT2G39930_circ_g.6
ID in PlantcircBase ath_circ_017561
Alias Ath_circ_FC1595
Organism Arabidpsis thaliana
Position chr2: 16669924-16670305  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ
Parent gene AT2G39930
Parent gene annotation ISA1
Parent gene strand +
Alternative splicing AT2G39930_circ_g.3 AT2G39930_circ_g.4 AT2G39930_circ_g.5
Support reads 26
Tissues whole_plant
Exon boundary   Yes-No
Splicing signals   GT-AA
Number of exons covered AT2G39930.2:1
AT2G39930.1:1
AT2G39930.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGAGACAACAATAATGAATATTCAGTTCTCGTGGTAGTTCCCATTAGTGTGTGCACTGTGCT
GGATATCTATCTTCGTTGTGAATTTGATATGGTATAggtcagttaatgtattacgaggataaaa
tgcttctttcaattgtttgagacatgagatatggaagagtaagtgtcacagtgtataagggttt
catgccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCAGTTAATGTATTACGAGGATAAAATGCTTCTTTCAATTGTTTGAGACATGAGATATGGAA
GAGTAAGTGTCACAGTGTATAAGGGTTTCATGCCAAATGTGATGTAATTATTAGTGGTTATTCA
TCTTTCTGCTGACCCTTAGAATATGCTCTAATCAATTGAAAATGGGACAGCCTATGTGATCTGC
CTGTACTAGCTAACTGAAGTGTATAGTAACCTACTAGCCTGTATTAGCAATGAACATGGAAGTC
TTAAACTTACTATCCAATAGACAACACATGAGACAACAATAATGAATATTCAGTTCTCGTGGTA
GTTCCCATTAGTGTGTGCACTGTGCTGGATATCTATCTTCGTTGTGAATTTGATATGGTATA
Conservation Information
Conserved circRNAs NA
PMCS 0.12021503
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a