Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025461_circ_g.3 |
ID in PlantcircBase | zma_circ_003217 |
Alias | circ358 |
Organism | Zea mays |
Position | chr10: 119224322-119224573 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d025461 |
Parent gene annotation |
Regulator of nonsense transcripts UPF3 |
Parent gene strand | - |
Alternative splicing | Zm00001d025461_circ_g.1 Zm00001d025461_circ_g.2 Zm00001d025461_circ_g.4 |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-CA |
Number of exons covered | Zm00001d025461_T003:2 Zm00001d025461_T011:2 Zm00001d025461_T012:2 Zm00001d025461_T009:2 Zm00001d025461_T014:2 Zm00001d025461_T005:2 Zm00001d025461_T002:2 Zm00001d025461_T015:2 Zm00001d025461_T008:2 Zm00001d025461_T017:2 Zm00001d025461_T004:2 Zm00001d025461_T001:2 Zm00001d025461_T006:1 Zm00001d025461_T013:2 Zm00001d025461_T007:1 Zm00001d025461_T010:2 Zm00001d025461_T016:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.191467063 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |