Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018450_circ_g.1 |
ID in PlantcircBase | zma_circ_008841 |
Alias | zma_circ_0002020 |
Organism | Zea mays |
Position | chr5: 221110082-221110950 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d018450 |
Parent gene annotation |
Trimeric LpxA-like enzyme |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d018450_T011:3 Zm00001d018450_T002:3 Zm00001d018450_T008:3 Zm00001d018450_T006:3 Zm00001d018450_T009:3 Zm00001d018450_T014:3 Zm00001d018450_T007:2 Zm00001d018450_T003:3 Zm00001d018450_T004:3 Zm00001d018450_T013:3 Zm00001d018450_T001:3 Zm00001d018450_T015:1 Zm00001d018450_T005:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.105606674 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
221110128-221110110(+) 221110212-221110875(-) |
Potential amino acid sequence |
MSLKDALQEHMDRKKKDPLAVMTMVIKHSKPSILTHQTRLGNDEIVMAIDPETKELLYYEDRAD NSHLHVTIDKDILTNNPTLQLHNDMEDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIM GYKIYTHELRSGYAARIDNFRSYDTVSKDVIQRWTYPMVPDVVSSRDSSESRLHRQGIYKASDT RRFCSHQW*(+) MLYNHSHNSKWVLFLPIHMFLESVLQAHVTDCITTDENKISVYLMPCIFPAYEVYSPRNHDWIL HQAP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |