Detail information of BGIOSGA004222_circ_g.1


General Information
CircRNA Name BGIOSGA004222_circ_g.1
ID in PlantcircBase osi_circ_010573
Alias Chr01:29561072_29562034(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 31553790-31554752  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA004222
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA004222-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGTGTTGGACTGACTGGTTTGACTGTTGCCGAGCATTTCCGTGATGCTGAAGGGCAGGATGTG
CTTCTCTTCATTGATAACATTTTCCGTTTCACTCAGggttcctgttggtagggccacacttggg
cgtattatgaatgtcatcggtgagcctattgatgagaagggagatatcagtaagtctaaatgat
atccattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTCCTGTTGGTAGGGCCACACTTGGGCGTATTATGAATGTCATCGGTGAGCCTATTGATGAG
AAGGGAGATATCAGTAAGTCTAAATGATATCCATTTGTATATTGTAGGTGTATGCATACATACT
ATATTTTCTTCCTTATGATCTTTAGTTATTGATTACCTTTCTTTGCCACAGCAACAAACCACTT
CCTCCCTATCCATCGTGAAGCCCCTGCTTTTGTTGAGCAAGCTACAGAGCAACAGATTCTTGTT
ACTGGAATTAAGGTACACTAATTTCTGTCTCTTCTGAAATGATTTTCTTAAACCCTGTGTCTTT
TTAAATTTCCTAGTTGGTTAGGTTTCTTAATCGTCAAGAGGCGTTCCTTTTAGTACCATTTTGT
CTTACACAAGGATTGCACATTTATCAGGTCGTGGATCTCCTTGCACCCTATCAAAGAGGTGGTA
AAATTGGTCTCTTCGGTGGTGCTGGGGTGGGCAAAACTGTACTTATTATGGAGTTGATCAACAA
TGTTGCGAAGGCTCATGGTTTGCTTTCTACAGAGCTTGATGGTCATATCCAAAGTCTTGTGCTG
TGCATTGCCTTATCTGGTTGACCTGTTTATTTTAGGTGGTTTCTCTGTCTTTGCTGGTGTTGGA
GAACGTACTCGTGAGGGTAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTGATTAAGCTTG
GTGACAAGCAGGTAAATAAGTCACATTTCAAATATGATATCAGTATATATTTTCTCTTTAATGA
AATTTCTCCTTACAAGGTAGTATTTTCCTTTGGCAGAGTGAGAGCAAGTGTGCTCTTGTCTACG
GGCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGACTGACTGGTTTGACTGTTGCCGA
GCATTTCCGTGATGCTGAAGGGCAGGATGTGCTTCTCTTCATTGATAACATTTTCCGTTTCACT
CAG
Conservation Information
Conserved circRNAs ath_circ_037142
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021