Detail information of AT2G06005_circ_g.1


General Information
CircRNA Name AT2G06005_circ_g.1
ID in PlantcircBase ath_circ_012953
Alias 2:2334362-2335158
Organism Arabidpsis thaliana
Position chr2: 2334362-2335158  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G06005
Parent gene annotation Expressed protein
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G06005.2:4
AT2G06005.5:4
AT2G06005.4:4
AT2G06005.1:4
AT2G06005.6:4
AT2G06005.3:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGTTTGGTATCAAAGGTATTATGAAGGCCGGCTTTCTGATCAACAAACGGCTTTGTTACAA
TATCAACGCGAAAATCTCCATTTTCTAAGCGAGGAGggactgctgcaatgcttcttgtgatagt
gtggaggcctcaaatccacattctttctatttcttctttgcaacggttggtagctcattgttcg
cacgttga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACTGCTGCAATGCTTCTTGTGATAGTGTGGAGGCCTCAAATCCACATTCTTTCTATTTCTTC
TTTGCAACGGTTGGTAGCTCATTGTTCGCACGTTGAGTTTCTTTAAACCTACTTTGTTTGCATT
GATATGAAACAAGAGCAGCTCTTGATAGGTTGGAGGAAAACTGTTTTTAACCACGATTATATAT
ATATGATCTGCAGGATCATCATGTTGGTTGAAGCAGTGGGCGCTGGCTTTTTCATGGGTTTATA
CATCGGTGAGTGAGTGAGTGGCTTGTTCTGCTATGTCGTCGCTATTTTTTTTTTCTTCTCACAA
TCCAGAATGTTACACTCTTGACATAACCGTCTTATGTAATAGTTAACTGTGTGTTGCCTAAAAT
CAAAACACTGAATGACAATGCTTACGATTGGTTAGTAAGGAAAAAACCCATCAGACTGAGTGTT
ATATGTTAATGTTGAACTACATTCTAAACCGATAGTTTTACCGAAGTACTGAGTGGTGCATTTT
GATATTCAGGTTATGTGCACCAATACAATTCCGTGAATTCCCGGCCAGATGTCTTGAAGTCATT
ATATTCTCCTCTTCAGCCGTCAAGTTCTATGGAAGGTTTGAGGTACTGAATGTCCTTAATGTAT
CTGATTTTATAAATTTATGCAGCTTCAGCAAATAATGTACAAGTTTGCTTCTTTCATTTTTGTT
TGGTATCAAAGGTATTATGAAGGCCGGCTTTCTGATCAACAAACGGCTTTGTTACAATATCAAC
GCGAAAATCTCCATTTTCTAAGCGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.122755657
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020