Plant Circular RNA Database

Detail information of GLYMA_04G094200_circ_g.1

			
						 General Information
					
						CircRNA Name
						GLYMA_04G094200_circ_g.1
					
						ID in PlantcircBase
						gma_circ_008135
					
						Alias
						circRNA4737
					
						Organism
						
							Glycine max						
					
						Position
						
							chr4: 8374453-8377487  JBrowse»						
					
						Reference genome
						
							v2.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI, CIRCexplorer
					
						Parent gene
						
							GLYMA_04G094200						
					
						Parent gene annotation
						
							hypothetical protein
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						pod
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						KRH62219:9

General Information
CircRNA Name	GLYMA_04G094200_circ_g.1
ID in PlantcircBase	gma_circ_008135
Alias	circRNA4737
Organism	Glycine max
Position	chr4: 8374453-8377487 JBrowse»
Reference genome	v2.0.38
Type	e-circRNA
Identification method	CIRI, CIRCexplorer
Parent gene	GLYMA_04G094200
Parent gene annotation	hypothetical protein
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	pod
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	KRH62219:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTGGTATTAGGGAACATTGCCACGGCAAAGCATTACATCTCAAAGGTACCGGCCTAAGTGGGGT
CCATAATCTGGAAAGCAGTGCTAAAGAATCCTGCCTattaatcttgttaacatccaagtgactg
atagcaaggtgagtcttgatgccccaatgagatttcttactaagattcctcacaacatttacac
tcaaattg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATTAATCTTGTTAACATCCAAGTGACTGATAGCAAGGTGAGTCTTGATGCCCCAATGAGATTTC
TTACTAAGATTCCTCACAACATTTACACTCAAATTGTGATTAGGAATATGAACTGCTTCACAAT
CAGAAACTCTCACTATTGTTGGTGACCACCAGCTTACATGCTATACAAAATATAAAATTTGATT
ACAATGAAAATTTTTAAAGATATATACTTGGGGAAAATATCACTTATAATAAAAATCACTTACA
CTGAATAACATTATGTTTTCTGTTCCTCCTAAACAACCTTTTCAGTAAGTTAGGTGATAGATAC
AAACCTCAACTTTACCAGTAACCTCATATCCTTTAATTTTTGTTTGAATCCGCTCATTCACAAC
AAATGGTCGAGTTGCATGAATCATTATACTCGAAAGGAAGTTTGTAAATATCTGAATACATCAC
AAAAATGAAGTGAGAATGACAGCAAACAAGAGTCTACCTGATTGATAATGGCTATCGCTATGGC
TATGCCTTGAAGAGTTACTCTTACAAAATTTGAGAAATCGAATATACTGGACAATGAATAAAAA
AATCAAATGACAAAGATGACTTAATCATTCTCATAGACACTATCAAAGAACATATACTGTACCT
CGCGACCTGCAAGGGAAATCGATACTGTGCCCAAACCACCAGCAGTCAACTACTTATGTGTGGA
AAAACCCAGCAACTCATGAACAATGACACAGCAGCAATCCATATTGCAGTATATACAGCTTTCC
CAGTAAAATCAATTCTCATCTGTCATTGGCAATACATTGAATAAGAATTGTGTTTACAATTCAG
GAATGCCCTCAGTAGTCAACAATCTAAATTAACAAATTTGAACTCCCTCACCAAAATATCCAAC
ACTAAAATGAGGAATATTATCCTATAACACTACCTTATTCATCACACATATTCAAATTTTGTTA
AACTAATATTCTGCAATCAAATTTTTTATTTCCTAGAGGTTGACTACTTTTTTAATCCTAATCT
GGAATAACACAACACTGAAACAAAATGTTATGTAAACAAAAATGGAAACATGATAAGGATCTGT
AACGAAAACCTACATTTCTTTCATCACTGGAGTCATTTGTCCCCATACAAATATTTTGTGCTTG
TCGAATTAAGCTGAAAATAGACAGCACAAGCATATTACATTATGAATTTGAACAAGACAAAAGA
TTCCAAACACATAATAGGAAGTAATGAGCAGCTGAAATAATTTATTTAAAAAAAATAATAAAGA
GGACCCAATCTTTTATCTGTGTAGTGTTTGAATAAATTAACAAAAGGTCTCAAAAAAATATATA
ACTGAATAGTTAAAATAAAATATAATAGAATCATCTTAGATAGCAAACTCCTCATCGGTTTATG
TGCTTCAGTGTTTTTTTCCTCCCATTATTTTTAGTTTTCAAATTGCATAGTCTACATTAGTGTG
TTTTTTACTTATAGTTCTAACAATAAGAAATCAAAAGTTTTTCTTACAATTAAGAAGTGCAATA
CAATAGTAACTAGGTTAGTTTACTAAACTACTGGGGATATAATTCTGCCAGAAATCAAATCCAC
CTTGAAGAACAGTAAGCAAATGTAAGCACGGTTGACAACGATCGTACAAAACTCAGCCGCCGTT
GCTTAATAGCTTGACTGGTTTCTGATGGTAGGACTAGTGGATCCAAATCCCTGAAACAGTTTAT
GCTAAGGTGTTCACCAATGGACATGACAAACTTCCAGTGGAAAAGACTTGTTGATCCAGAAAGA
TACCTGCAGATGAGCATTACCCCAGGCCACAACAGCAAAGGTTGAAAATAAGATGTCAAAATAT
AACGTGAACTACTTTTCTTCCAATCTGTCCTCTGAAAACATCACGGAATAGAAAGTAAGCAATT
GATACTATTCAATTGATTTAGACAAAACATGCAATAAGATAAGATGCTAACTTCTTGGAGAAAA
AGATTCCTGCTCAGGCGTAGGAGCGGCTCAAGGCCAAAAACAGCAAAGCCAATGATACCAAGGG
CAGGGATAAATTGAATCACACTTGGTTTTCCTGCTATAGCATTATATGACCTACACTGATTTTC
AAAAATAAATATCTCGAGATTATATTCAGCAATAGATAGATGAAAAAGGAAAGATTTGAACAAA
CAGAATTTAGCATCAGATGACATGATTTATGATGATAAAACTTCATGCCTACACATATCATAAT
ACCATGCAATGGGTTTGTTTTGTAGTTCATTTCTAATTAATTCAGAGTCTCGGCGGGGTTTGGT
TGATTCCCTATTACTACCCACTGCTCCACCACCACTCTCAAAAAGGGGAATCAGAGGTCAGTAC
TTTAGATGCCCAACACAAATATCAACAAAATACGAAAGAGATATAATGAAGGAAAAATGAGAGG
ACGCAACCATACAGCTGCAGTGTGTACTAGCTAGCAAGTCACATGCAGTGGCTTGGAGAGGAGT
AAATTGTCAACATATCAAAGAAAAAATTGGTGTCAACATATCACAGAAAGTCCATTTTGGCAGA
ATATAGTCATAACTCTTAATCATAATTACTTTCTAAGTTTACAACTAGTAACATACACAGTAAA
ATAACTGCAGAAAATACATATGGAACAGATATGATTGTTATTCATGAAACTTTAGTTGCATCAT
GCATGACGTAGAGTTATCAGTCCATAGGAAGTCCAGTCAAAAGTAAGTGGTACACACCCATCAA
ACTAATTGTTTTTTGCAATTTAAGGAAAGCCTTTATCAGGAAAACTGGAACACTACATATAAAC
CATGATATGCATTATCAATGAAATTGCAGTAACTTCTCTCAACTACGAGGAGAGAAATAGAGAG
AGGGACCTTGACAGAGAAACAGAAGCCACTATAAGTGGGGCCTCACACCCTCCAGCTGGTATTA
GGGAACATTGCCACGGCAAAGCATTACATCTCAAAGGTACCGGCCTAAGTGGGGTCCATAATCT
GGAAAGCAGTGCTAAAGAATCCTGCCT
						
					

			
		

Sequences
Splice junction sequence	CTGGTATTAGGGAACATTGCCACGGCAAAGCATTACATCTCAAAGGTACCGGCCTAAGTGGGGT CCATAATCTGGAAAGCAGTGCTAAAGAATCCTGCCTattaatcttgttaacatccaagtgactg atagcaaggtgagtcttgatgccccaatgagatttcttactaagattcctcacaacatttacac tcaaattg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATTAATCTTGTTAACATCCAAGTGACTGATAGCAAGGTGAGTCTTGATGCCCCAATGAGATTTC TTACTAAGATTCCTCACAACATTTACACTCAAATTGTGATTAGGAATATGAACTGCTTCACAAT CAGAAACTCTCACTATTGTTGGTGACCACCAGCTTACATGCTATACAAAATATAAAATTTGATT ACAATGAAAATTTTTAAAGATATATACTTGGGGAAAATATCACTTATAATAAAAATCACTTACA CTGAATAACATTATGTTTTCTGTTCCTCCTAAACAACCTTTTCAGTAAGTTAGGTGATAGATAC AAACCTCAACTTTACCAGTAACCTCATATCCTTTAATTTTTGTTTGAATCCGCTCATTCACAAC AAATGGTCGAGTTGCATGAATCATTATACTCGAAAGGAAGTTTGTAAATATCTGAATACATCAC AAAAATGAAGTGAGAATGACAGCAAACAAGAGTCTACCTGATTGATAATGGCTATCGCTATGGC TATGCCTTGAAGAGTTACTCTTACAAAATTTGAGAAATCGAATATACTGGACAATGAATAAAAA AATCAAATGACAAAGATGACTTAATCATTCTCATAGACACTATCAAAGAACATATACTGTACCT CGCGACCTGCAAGGGAAATCGATACTGTGCCCAAACCACCAGCAGTCAACTACTTATGTGTGGA AAAACCCAGCAACTCATGAACAATGACACAGCAGCAATCCATATTGCAGTATATACAGCTTTCC CAGTAAAATCAATTCTCATCTGTCATTGGCAATACATTGAATAAGAATTGTGTTTACAATTCAG GAATGCCCTCAGTAGTCAACAATCTAAATTAACAAATTTGAACTCCCTCACCAAAATATCCAAC ACTAAAATGAGGAATATTATCCTATAACACTACCTTATTCATCACACATATTCAAATTTTGTTA AACTAATATTCTGCAATCAAATTTTTTATTTCCTAGAGGTTGACTACTTTTTTAATCCTAATCT GGAATAACACAACACTGAAACAAAATGTTATGTAAACAAAAATGGAAACATGATAAGGATCTGT AACGAAAACCTACATTTCTTTCATCACTGGAGTCATTTGTCCCCATACAAATATTTTGTGCTTG TCGAATTAAGCTGAAAATAGACAGCACAAGCATATTACATTATGAATTTGAACAAGACAAAAGA TTCCAAACACATAATAGGAAGTAATGAGCAGCTGAAATAATTTATTTAAAAAAAATAATAAAGA GGACCCAATCTTTTATCTGTGTAGTGTTTGAATAAATTAACAAAAGGTCTCAAAAAAATATATA ACTGAATAGTTAAAATAAAATATAATAGAATCATCTTAGATAGCAAACTCCTCATCGGTTTATG TGCTTCAGTGTTTTTTTCCTCCCATTATTTTTAGTTTTCAAATTGCATAGTCTACATTAGTGTG TTTTTTACTTATAGTTCTAACAATAAGAAATCAAAAGTTTTTCTTACAATTAAGAAGTGCAATA CAATAGTAACTAGGTTAGTTTACTAAACTACTGGGGATATAATTCTGCCAGAAATCAAATCCAC CTTGAAGAACAGTAAGCAAATGTAAGCACGGTTGACAACGATCGTACAAAACTCAGCCGCCGTT GCTTAATAGCTTGACTGGTTTCTGATGGTAGGACTAGTGGATCCAAATCCCTGAAACAGTTTAT GCTAAGGTGTTCACCAATGGACATGACAAACTTCCAGTGGAAAAGACTTGTTGATCCAGAAAGA TACCTGCAGATGAGCATTACCCCAGGCCACAACAGCAAAGGTTGAAAATAAGATGTCAAAATAT AACGTGAACTACTTTTCTTCCAATCTGTCCTCTGAAAACATCACGGAATAGAAAGTAAGCAATT GATACTATTCAATTGATTTAGACAAAACATGCAATAAGATAAGATGCTAACTTCTTGGAGAAAA AGATTCCTGCTCAGGCGTAGGAGCGGCTCAAGGCCAAAAACAGCAAAGCCAATGATACCAAGGG CAGGGATAAATTGAATCACACTTGGTTTTCCTGCTATAGCATTATATGACCTACACTGATTTTC AAAAATAAATATCTCGAGATTATATTCAGCAATAGATAGATGAAAAAGGAAAGATTTGAACAAA CAGAATTTAGCATCAGATGACATGATTTATGATGATAAAACTTCATGCCTACACATATCATAAT ACCATGCAATGGGTTTGTTTTGTAGTTCATTTCTAATTAATTCAGAGTCTCGGCGGGGTTTGGT TGATTCCCTATTACTACCCACTGCTCCACCACCACTCTCAAAAAGGGGAATCAGAGGTCAGTAC TTTAGATGCCCAACACAAATATCAACAAAATACGAAAGAGATATAATGAAGGAAAAATGAGAGG ACGCAACCATACAGCTGCAGTGTGTACTAGCTAGCAAGTCACATGCAGTGGCTTGGAGAGGAGT AAATTGTCAACATATCAAAGAAAAAATTGGTGTCAACATATCACAGAAAGTCCATTTTGGCAGA ATATAGTCATAACTCTTAATCATAATTACTTTCTAAGTTTACAACTAGTAACATACACAGTAAA ATAACTGCAGAAAATACATATGGAACAGATATGATTGTTATTCATGAAACTTTAGTTGCATCAT GCATGACGTAGAGTTATCAGTCCATAGGAAGTCCAGTCAAAAGTAAGTGGTACACACCCATCAA ACTAATTGTTTTTTGCAATTTAAGGAAAGCCTTTATCAGGAAAACTGGAACACTACATATAAAC CATGATATGCATTATCAATGAAATTGCAGTAACTTCTCTCAACTACGAGGAGAGAAATAGAGAG AGGGACCTTGACAGAGAAACAGAAGCCACTATAAGTGGGGCCTCACACCCTCCAGCTGGTATTA GGGAACATTGCCACGGCAAAGCATTACATCTCAAAGGTACCGGCCTAAGTGGGGTCCATAATCT GGAAAGCAGTGCTAAAGAATCCTGCCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.031220146

Conservation Information
Conserved circRNAs	NA
PMCS	0.031220146

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							8376263-8374455(-)
						
						Potential amino acid sequence
						
							MLICRDLDPLVLPSETSQAIKQRRLSFVRSLSTVLTFAYCSSSLIRQAQNICMGTNDSSDERNM
RIDFTGKAVYTAIWIAALTAGGLGTVSISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGY
EVTGKVEHVSWWSPTIVRVSDCEAVHIPNHNLSVNVVRNLSKKSHWGIKTHLAISHLDVNKINR
QDSLALLSRLWTPLRPVPLRCNALPWQCSLIPAGGCEAPLIVASVSLSRSYNAIAGKPSVIQFI
PALGIIGFAVFGLEPLLRLSRNLFLQERTDWKKSSSRYILTSYFQPLLLWPGVMLICRDLDPLV
LPSETSQAIKQRRLSFVRSLSTVLTFAYCSSSLIRQAQNICMGTNDSSDERNMRIDFTGKAVYT
AIWIAALTAGGLGTVSISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVSW
WSPTIVRVSDCEAVHIPNHNLSVNVVRNLSKKSHWGIKTHLAISHLDVNKINRQDSLALLSRLW
TPLRPVPLRCNALPWQCSLIPAGGCEAPLIVASVSLSRSYNAIAGKPSVIQFIPALGIIGFAVF
GLEPLLRLSRNLFLQERTDWKKSSSRYILTSYFQPLLLWPGVMLICRDLDPLVLPSETSQAIKQ
RRLSFVRSLSTVLTFAYCSSSLIRQAQNICMGTNDSSDERNMRIDFTGKAVYTAIWIAALTAGG
LGTVSISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVSWWSPTIVRVSDC
EAVHIPNHNLSVNVVRNLSKKSHWGIKTHLAISHLDVNKINRQDSLALLSRLWTPLRPVPLRCN
ALPWQCSLIPAGGCEAPLIVASVSLSRSYNAIAGKPSVIQFIPALGIIGFAVFGLEPLLRLSRN
LFLQERTDWKKSSSRYILTSYFQPLLLWPGVMLICRDLDPLVLPSETSQAIKQRRLSFVRSLST
VLTFAYCSSSLIRQAQNICMGTNDSSDERNMRIDFTGKAVYTAIWIAALTAGGLGTVSISLAGR
EIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVSWWSPTIVRVSDCEAVHIPNHNLS
VNVVRNLSKKSHWGIKTHLAISHLDVNKIN(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	8376263-8374455(-)
Potential amino acid sequence	MLICRDLDPLVLPSETSQAIKQRRLSFVRSLSTVLTFAYCSSSLIRQAQNICMGTNDSSDERNM RIDFTGKAVYTAIWIAALTAGGLGTVSISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGY EVTGKVEHVSWWSPTIVRVSDCEAVHIPNHNLSVNVVRNLSKKSHWGIKTHLAISHLDVNKINR QDSLALLSRLWTPLRPVPLRCNALPWQCSLIPAGGCEAPLIVASVSLSRSYNAIAGKPSVIQFI PALGIIGFAVFGLEPLLRLSRNLFLQERTDWKKSSSRYILTSYFQPLLLWPGVMLICRDLDPLV LPSETSQAIKQRRLSFVRSLSTVLTFAYCSSSLIRQAQNICMGTNDSSDERNMRIDFTGKAVYT AIWIAALTAGGLGTVSISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVSW WSPTIVRVSDCEAVHIPNHNLSVNVVRNLSKKSHWGIKTHLAISHLDVNKINRQDSLALLSRLW TPLRPVPLRCNALPWQCSLIPAGGCEAPLIVASVSLSRSYNAIAGKPSVIQFIPALGIIGFAVF GLEPLLRLSRNLFLQERTDWKKSSSRYILTSYFQPLLLWPGVMLICRDLDPLVLPSETSQAIKQ RRLSFVRSLSTVLTFAYCSSSLIRQAQNICMGTNDSSDERNMRIDFTGKAVYTAIWIAALTAGG LGTVSISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVSWWSPTIVRVSDC EAVHIPNHNLSVNVVRNLSKKSHWGIKTHLAISHLDVNKINRQDSLALLSRLWTPLRPVPLRCN ALPWQCSLIPAGGCEAPLIVASVSLSRSYNAIAGKPSVIQFIPALGIIGFAVFGLEPLLRLSRN LFLQERTDWKKSSSRYILTSYFQPLLLWPGVMLICRDLDPLVLPSETSQAIKQRRLSFVRSLST VLTFAYCSSSLIRQAQNICMGTNDSSDERNMRIDFTGKAVYTAIWIAALTAGGLGTVSISLAGR EIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVSWWSPTIVRVSDCEAVHIPNHNLS VNVVRNLSKKSHWGIKTHLAISHLDVNKIN(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021a

circRNA

Detail information of GLYMA_04G094200_circ_g.1

Address

Any questions?

Supported by