Detail information of AT2G04660_circ_g.3


General Information
CircRNA Name AT2G04660_circ_g.3
ID in PlantcircBase ath_circ_012804
Alias 2:1628341-1628679
Organism Arabidpsis thaliana
Position chr2: 1628341-1628679  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04660
Parent gene annotation APC2
Parent gene strand +
Alternative splicing AT2G04660_circ_g.4
Support reads 1/1/1/1
Tissues seedling;leaf;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04660.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGAACGAAGGCGAGGAGCTTCTAACAGGTGAGGAAGAGGGTGAAACATCAATTGCCTCTGTG
GAAGATCAGCTTCGCAAAGAAATGACGATATACGAGttggacctataaagatcttgctgaagtc
attgggatacccattgatgcattaaaccgaagagtaaacttctggataagcaaggtatataccg
taattgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGACCTATAAAGATCTTGCTGAAGTCATTGGGATACCCATTGATGCATTAAACCGAAGAGTA
AACTTCTGGATAAGCAAGGTATATACCGTAATTGTAGTCTCCTGCTTTAAACCAGTCATTTAGA
TGAAAAGCTTATTTGCAAGTTTTTCTGTACTTAGGGAGTTCTGAGAGAATCTACAGGAGCAAAC
TCAAATTCCAGTGTGTTAACGCTCGTTGAATCCATAACTGATTCTGGAAAGAACGAAGGCGAGG
AGCTTCTAACAGGTGAGGAAGAGGGTGAAACATCAATTGCCTCTGTGGAAGATCAGCTTCGCAA
AGAAATGACGATATACGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.125369838
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020