Detail information of AT1G59870_circ_g.16


General Information
CircRNA Name AT1G59870_circ_g.16
ID in PlantcircBase ath_circ_008073
Alias Ath_circ_FC5235
Organism Arabidpsis thaliana
Position chr1: 22037573-22037902  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT1G59870
Parent gene annotation ABC transporter G family member 36
Parent gene strand +
Alternative splicing AT1G59870_circ_g.10 AT1G59870_circ_g.11 AT1G59870_circ_g.12 AT1G59870_circ_g.13 AT1G59870_circ_g.14 AT1G59870_circ_g.15 AT1G59870_circ_g.17 AT1G59870_circ_g.18 AT1G59870_circ_g.19 AT1G59870_circ_g.20
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G59870.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCATCAGGTGGTGCAGGCAATAAGAAAGGAATGGTTCTTCCTTTCACTCCTTTAGCTATGTCC
TTTGACGACGTCAAATACTTTGTTGACATGCCTGGGctcttgggaagaaggcaggtttacttcc
agaagaagaaaatgaagacgctgatcaggggaaagatccaatgcgtagatctttgtctactgca
gatgggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTGGGAAGAAGGCAGGTTTACTTCCAGAAGAAGAAAATGAAGACGCTGATCAGGGGAAAGA
TCCAATGCGTAGATCTTTGTCTACTGCAGATGGGAACAGAAGTAAGTAAACACATTTCTTAATC
TGCTTAGATGTTTTGCTTTTCTTGTACTCTTGTCTCATTCTGCTCCCTGCTATCAGGAGGAGAG
GTCGCAATGGGGAGAATGAGTAGGGACTCTGCGGCTGAAGCATCAGGTGGTGCAGGCAATAAGA
AAGGAATGGTTCTTCCTTTCACTCCTTTAGCTATGTCCTTTGACGACGTCAAATACTTTGTTGA
CATGCCTGGG
Conservation Information
Conserved circRNAs NA
PMCS 0.181409343
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a