Plant Circular RNA Database

Detail information of Solyc06g084590.2_circ_g.1

			
						 General Information
					
						CircRNA Name
						Solyc06g084590.2_circ_g.1
					
						ID in PlantcircBase
						sly_circ_002137
					
						Alias
						NA
					
						Organism
						
							Solanum lycopersicum						
					
						Position
						
							chr6: 49661666-49666033  JBrowse»						
					
						Reference genome
						
							SL2.50.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						CIRI; find_circ
					
						Parent gene
						
							Solyc06g084590.2						
					
						Parent gene annotation
						
							protein_coding
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-CA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Solyc06g084590.2.1:5

General Information
CircRNA Name	Solyc06g084590.2_circ_g.1
ID in PlantcircBase	sly_circ_002137
Alias	NA
Organism	Solanum lycopersicum
Position	chr6: 49661666-49666033 JBrowse»
Reference genome	SL2.50.38
Type	ei-circRNA
Identification method	CIRI; find_circ
Parent gene	Solyc06g084590.2
Parent gene annotation	protein_coding
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-CA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Solyc06g084590.2.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTATATGGCCTCTATGTTCCAGACTGGTTCTTTGAAATATCTAGTCTTAACATGGAATCACGA
TCACCAGTTTCAGGATATCGATTGAGTACTCAAACTgttaatgattttggttgatgatgctgga
aaggctttcccgtccataaaccactctccatggttcggagtgacccttgctgactttgtgatgc
catttttc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTTAATGATTTTGGTTGATGATGCTGGAAAGGCTTTCCCGTCCATAAACCACTCTCCATGGTTC
GGAGTGACCCTTGCTGACTTTGTGATGCCATTTTTCCTATTTATCGTTGGTGTTTCTGCAAGTT
TAGTATTCAAGGTACCAATTCATAATGCTCTTTGTTAGGTAATCCAATTTTTTTCAATTTCAAC
AGTGATCTATTGTTGATGCAGAAAGTTTCCTGCAAGCCACAAGCTACAAAAAAAGTCTTACTGA
GGACAGTTAAGCTCTTTATTTTGGGAGTAGTCCTTCAAGGTATGCCATTTTCTAAGCGACTCAC
ATCCCAAGAGAGAGACTAAAAGAGGAAAAGAAAAAGAAGATCTTAGCCCTCAATTATTATTTGC
CAAAATGTTTTGTGTACATAGAAGAGAAATGACTATGTTCTACTTATGCTCTGCGTTCATTTTC
TACTTATCAACAACAACATACCCAGTATAATCTCTCAAGCGAGGTCAAGGGAGAGTAGCCCTAC
TAGAGAGTAGAGAGGTTGTTTCCACCCTCGGCTCCAGGAAAGGCAGATCAAAAAAGAAATAAAA
GAAGTGAAGAATTCATTGAAAATACTATAGAAAGCATGACATGCATTCTTGAAAAAATAGCAGC
TACAATAAAATAGTGTGACAATCGATGTACAAGAGATAGTAGATAGTAACAGAATTGAAGGACA
AGAAACTACAAGAGAAATACTACGACCTCTAGTATGGAAGGATAAACAAGACAACACTCTATTA
TTTACTAACTTTCTTCCCTAATCTGTGTCTTCTACAACCTCTTATCTAAGGTCATGTCTTCGAT
ATGCTGCAACTGCATCATGTCCTGTCTAACTACCTCTCTTCAATACATTTTTGGCCTATCGCCT
ACCTCTAGCTCTCCTGAAGCTATCCATAACCAACCTCTCACACCTCCGCATTGAGGCATTCATG
CATATGCTCTTTTACATGCCCTGACCATCTCAGTTAAACTTCATTTGTGTGATGAAATGCCAGA
TCCGATGTAATCAATATGTAAGTCAACATGTAGAGCAAATCATGGACTGCTGGTATTGAAGAAG
TAAAGATTAATTATGCAAGGATAAGAAAATATCTATCTATATATATATAACTGACTTAAGTGAG
ATCTAACTGACTTAATGACCTAACTGACTAATATCCTCATAGTTCACTGTATTTACAAGTATGC
CATTGTCTTCATATATATATATATATATATATATATAAAACCGACTTAAGTGAGATCTAACTGA
ATGACCTAACTGACTAATATCCTCATAGTTCACTGTATTTACAAGTATGCCATTGTCTTCCACA
TTATCATTTCAGCATCTCTTCAAGCTAGTTGGTGGGAAAACATTCAAAACACCTAGCTTTGATA
ATCGATGATAATGTTGAACTCCTCCAAGTCCCTTTGTCAAGAAATCTCTTCTTGCTCAGTTGTT
GGAACATACTATGGATGAACTAGATCCTGCAGCACTTCTCCCTTATCAAATGACAATCTTTATG
TGTTTTGTTCTTTCATGAAACACAAGATTCTTTGCTATCTGCATTGCTGCCTTACTGTCTGTGA
GCAACTGAATTGGCGTAGGAACGCTAACTCCAGATACTTGAATAATACCAATAGCCAGATAAAT
TCTGATACTATTAATACCATGCTTCTATAGTCGGATTCTACTGAGCTTTTTGCCACTGTGTTAT
GCTTCTTTGACTTCCATTATATTAAAGATCCAGCTGCCTCCAAATATGACTTCTTTGGAGTCTG
CATGGACTAACTCAAGGTCTAAATACTATGGGCTATATCCAGCCTAGAACTGTACGACAACCTG
TCTGCCTTGTCTTCTCAATGTGAATAAAGAATATCATATTGACTTAGAAAAAGACCAACTAATA
AGGGCATTAGTGGAATTCAGATTCCATAGCCTTAATGCTTGCTTAAGACCATAACGAGATTTGA
GGAGCCTACAACCCTTATTATGGCTGTCAAGTCCAGGTGGAAACAATATGTAAACCTCCTCCTC
TCCTCTTGCAAAGAGAGCACTGTAAACATCCCTTTGATATAGACTCCAGATAGGCATAGTAGTG
AAGGCAATGACAGCCGTAGCTGTCACCATCTTAACAACAAGAGGAAAAGTCTCCAAATAGTCCA
ACCCCTTTTGTTGGCTATACCCTTTCACCACAAGCCTTGCGTTGAATCTTTCCACCTCATCAAT
AGACTTATATTTGATCTAATATACCCATTTACAATCAATGGAAATCTTTCCTCTGGACGCATCA
ACCACCTCCCAAGTCTTATTCTAAACCAAAGCATCTATCTTAGACTGCATGGCAACTGGGAGAA
ATAAATGAGAAAAAATATTAGGATTGAAAATAATCATACGAGTTTTGAGATTTGAGATTGAAGT
CATTGTTGTGAAAGACTGAAACCAAGCTTATGTTGTGGTATTGCTTGGGCAAAAGCATTGATGA
GTATGATGATGTGGATGGAAAATTGTGCAAAAACTATTAAGTATAATGAACTTAACCATGAAAG
AGGGTGGTGGTGGGTGCACACTGTACACCTATCAACCATGGTGGGCTTATTCGAACTAGGGTCC
TCTTTTTGGATGGCATTGAGTATCCATATATTATTGACTATCAAGGCCATATATTATTGATTGT
CGAAGATTTATTAGTAAATGGAACTTTTTGCTGACTTCGTCAAAATTAAGATTATGATTTAATG
TGTACTGCTTTGAAAAAACATAAGGATGAAATTTGCTGAGAGGTAACACCTGGAGGAAAAAGGG
ATCAGTTGCTTCTGTCCTGCTTGAACTGAAAATTTGACATCATGAGCTTCTGTTATTATTAGCT
TTTTAGATATTCTGGCAAAGTAAAAAGCCTCCCTTACATAAACTGTTCCATCAACTGCATGTAA
ACTCACATATGTTACAGTTACAAGTCACTGAATCACTCATTCGTAGGTGGGTATTTCCACGGCC
GCAACAACCTGAGTTATGGAGTTGATATTGCTAAAATTAGATGGATGGGAGTGTTACAGGTACT
TTGTGTGACAATGGCTTGTGTTTCTTAATTGATTATTCCTGAAGTTGTATTCCCTGGCGCTCTT
CTATACTCTTAGGTAGATCAAAACCTTTAATGTTAGTTGTATTTAAGTTTCTATACATCCTACC
GTTACTCTATTTGCTTTCTGTTGTAGAGGATTTCCATCGGTTATTTATTTGCTTCAATCCTGGA
AATTTGGTTTGCCAATGATTATCCTGTTGATTCATCAAAGGCATTTATCAGGAGATACTTCTTC
CAAGCGTAAGTATACCTTTTGAGATTCTGGATCATCTGGTGTTAGGTTCATTCATGGTTTATTT
TAATCCTTCTGTTGGTGATTCACATGGTTGAAGTGTTCATTCATGGTTTATTTTAATCTTTTGT
TGGCGATTCACATAGTTGAAGTGTTTGTTTTTCTTAATTTTGTCTTCCTATGTCAAGAATTTCA
CACATATCCGTTCAAGATTTTTGTAGTGCTTGAAATTTTGTGGTAGCAGCAGAATATTTATCCT
TAAGCATGTGTATGAACTAGTACCCTTGAGAATCTGTGAATGATATTACTACTTGTCCTGCAAA
AAATGATCTATGATACTCCAAAGGAGTTCATGAAGTGCAACATTACCAGTTTTTTTTAAAAAAA
TTTCATGAAGTGCATAACAATATTCTAGTGATTCAAATGGCTATCCATCTGTTACTGGGAATAC
AGCTGGTTGACATTTGTTCTCTGTCTATGCTATTTCTACTTCTTATATAGCAGTCCTTTGACCT
GAACAATCAAATGAAATTTTCGTCCCTTAGCATTTTGCTTGTTGGAATTAAATGCAGCTTAAGC
AAAACCTATTTAACTTTTCAGTGGATATGTTCTCCTATTGCACATTTTCCTGAGACATGGTCCA
ATACATGATGACCCTTTCAGCTTTTTGCTTGTCCAGAATATGGGTATGTGCAATTGTATGATGT
TCGTAATTGTTATGAGGAATGATGAGATCCCAGTTATTTTTATCTGATCAGTCATTTTAACCTC
AATTCTGTTACAAAAAAAATGATGAGATCCCAGATCTGATCAATTATGCCTTTATGCCAATTTG
AAAATTGCAAAGTAATTCTATTTGAGAACCTTTTTTTTTTTAAATGCTAATATGCTTCTCAATA
TGCAGGCTGGCTGGAATGTTAATTGGTTTGTCGTACCTGATTTTGGTATATGGCCTCTATGTTC
CAGACTGGTTCTTTGAAATATCTAGTCTTAACATGGAATCACGATCACCAGTTTCAGGATATCG
ATTGAGTACTCAAACT
						
					

			
		

Sequences
Splice junction sequence	GGTATATGGCCTCTATGTTCCAGACTGGTTCTTTGAAATATCTAGTCTTAACATGGAATCACGA TCACCAGTTTCAGGATATCGATTGAGTACTCAAACTgttaatgattttggttgatgatgctgga aaggctttcccgtccataaaccactctccatggttcggagtgacccttgctgactttgtgatgc catttttc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTTAATGATTTTGGTTGATGATGCTGGAAAGGCTTTCCCGTCCATAAACCACTCTCCATGGTTC GGAGTGACCCTTGCTGACTTTGTGATGCCATTTTTCCTATTTATCGTTGGTGTTTCTGCAAGTT TAGTATTCAAGGTACCAATTCATAATGCTCTTTGTTAGGTAATCCAATTTTTTTCAATTTCAAC AGTGATCTATTGTTGATGCAGAAAGTTTCCTGCAAGCCACAAGCTACAAAAAAAGTCTTACTGA GGACAGTTAAGCTCTTTATTTTGGGAGTAGTCCTTCAAGGTATGCCATTTTCTAAGCGACTCAC ATCCCAAGAGAGAGACTAAAAGAGGAAAAGAAAAAGAAGATCTTAGCCCTCAATTATTATTTGC CAAAATGTTTTGTGTACATAGAAGAGAAATGACTATGTTCTACTTATGCTCTGCGTTCATTTTC TACTTATCAACAACAACATACCCAGTATAATCTCTCAAGCGAGGTCAAGGGAGAGTAGCCCTAC TAGAGAGTAGAGAGGTTGTTTCCACCCTCGGCTCCAGGAAAGGCAGATCAAAAAAGAAATAAAA GAAGTGAAGAATTCATTGAAAATACTATAGAAAGCATGACATGCATTCTTGAAAAAATAGCAGC TACAATAAAATAGTGTGACAATCGATGTACAAGAGATAGTAGATAGTAACAGAATTGAAGGACA AGAAACTACAAGAGAAATACTACGACCTCTAGTATGGAAGGATAAACAAGACAACACTCTATTA TTTACTAACTTTCTTCCCTAATCTGTGTCTTCTACAACCTCTTATCTAAGGTCATGTCTTCGAT ATGCTGCAACTGCATCATGTCCTGTCTAACTACCTCTCTTCAATACATTTTTGGCCTATCGCCT ACCTCTAGCTCTCCTGAAGCTATCCATAACCAACCTCTCACACCTCCGCATTGAGGCATTCATG CATATGCTCTTTTACATGCCCTGACCATCTCAGTTAAACTTCATTTGTGTGATGAAATGCCAGA TCCGATGTAATCAATATGTAAGTCAACATGTAGAGCAAATCATGGACTGCTGGTATTGAAGAAG TAAAGATTAATTATGCAAGGATAAGAAAATATCTATCTATATATATATAACTGACTTAAGTGAG ATCTAACTGACTTAATGACCTAACTGACTAATATCCTCATAGTTCACTGTATTTACAAGTATGC CATTGTCTTCATATATATATATATATATATATATATAAAACCGACTTAAGTGAGATCTAACTGA ATGACCTAACTGACTAATATCCTCATAGTTCACTGTATTTACAAGTATGCCATTGTCTTCCACA TTATCATTTCAGCATCTCTTCAAGCTAGTTGGTGGGAAAACATTCAAAACACCTAGCTTTGATA ATCGATGATAATGTTGAACTCCTCCAAGTCCCTTTGTCAAGAAATCTCTTCTTGCTCAGTTGTT GGAACATACTATGGATGAACTAGATCCTGCAGCACTTCTCCCTTATCAAATGACAATCTTTATG TGTTTTGTTCTTTCATGAAACACAAGATTCTTTGCTATCTGCATTGCTGCCTTACTGTCTGTGA GCAACTGAATTGGCGTAGGAACGCTAACTCCAGATACTTGAATAATACCAATAGCCAGATAAAT TCTGATACTATTAATACCATGCTTCTATAGTCGGATTCTACTGAGCTTTTTGCCACTGTGTTAT GCTTCTTTGACTTCCATTATATTAAAGATCCAGCTGCCTCCAAATATGACTTCTTTGGAGTCTG CATGGACTAACTCAAGGTCTAAATACTATGGGCTATATCCAGCCTAGAACTGTACGACAACCTG TCTGCCTTGTCTTCTCAATGTGAATAAAGAATATCATATTGACTTAGAAAAAGACCAACTAATA AGGGCATTAGTGGAATTCAGATTCCATAGCCTTAATGCTTGCTTAAGACCATAACGAGATTTGA GGAGCCTACAACCCTTATTATGGCTGTCAAGTCCAGGTGGAAACAATATGTAAACCTCCTCCTC TCCTCTTGCAAAGAGAGCACTGTAAACATCCCTTTGATATAGACTCCAGATAGGCATAGTAGTG AAGGCAATGACAGCCGTAGCTGTCACCATCTTAACAACAAGAGGAAAAGTCTCCAAATAGTCCA ACCCCTTTTGTTGGCTATACCCTTTCACCACAAGCCTTGCGTTGAATCTTTCCACCTCATCAAT AGACTTATATTTGATCTAATATACCCATTTACAATCAATGGAAATCTTTCCTCTGGACGCATCA ACCACCTCCCAAGTCTTATTCTAAACCAAAGCATCTATCTTAGACTGCATGGCAACTGGGAGAA ATAAATGAGAAAAAATATTAGGATTGAAAATAATCATACGAGTTTTGAGATTTGAGATTGAAGT CATTGTTGTGAAAGACTGAAACCAAGCTTATGTTGTGGTATTGCTTGGGCAAAAGCATTGATGA GTATGATGATGTGGATGGAAAATTGTGCAAAAACTATTAAGTATAATGAACTTAACCATGAAAG AGGGTGGTGGTGGGTGCACACTGTACACCTATCAACCATGGTGGGCTTATTCGAACTAGGGTCC TCTTTTTGGATGGCATTGAGTATCCATATATTATTGACTATCAAGGCCATATATTATTGATTGT CGAAGATTTATTAGTAAATGGAACTTTTTGCTGACTTCGTCAAAATTAAGATTATGATTTAATG TGTACTGCTTTGAAAAAACATAAGGATGAAATTTGCTGAGAGGTAACACCTGGAGGAAAAAGGG ATCAGTTGCTTCTGTCCTGCTTGAACTGAAAATTTGACATCATGAGCTTCTGTTATTATTAGCT TTTTAGATATTCTGGCAAAGTAAAAAGCCTCCCTTACATAAACTGTTCCATCAACTGCATGTAA ACTCACATATGTTACAGTTACAAGTCACTGAATCACTCATTCGTAGGTGGGTATTTCCACGGCC GCAACAACCTGAGTTATGGAGTTGATATTGCTAAAATTAGATGGATGGGAGTGTTACAGGTACT TTGTGTGACAATGGCTTGTGTTTCTTAATTGATTATTCCTGAAGTTGTATTCCCTGGCGCTCTT CTATACTCTTAGGTAGATCAAAACCTTTAATGTTAGTTGTATTTAAGTTTCTATACATCCTACC GTTACTCTATTTGCTTTCTGTTGTAGAGGATTTCCATCGGTTATTTATTTGCTTCAATCCTGGA AATTTGGTTTGCCAATGATTATCCTGTTGATTCATCAAAGGCATTTATCAGGAGATACTTCTTC CAAGCGTAAGTATACCTTTTGAGATTCTGGATCATCTGGTGTTAGGTTCATTCATGGTTTATTT TAATCCTTCTGTTGGTGATTCACATGGTTGAAGTGTTCATTCATGGTTTATTTTAATCTTTTGT TGGCGATTCACATAGTTGAAGTGTTTGTTTTTCTTAATTTTGTCTTCCTATGTCAAGAATTTCA CACATATCCGTTCAAGATTTTTGTAGTGCTTGAAATTTTGTGGTAGCAGCAGAATATTTATCCT TAAGCATGTGTATGAACTAGTACCCTTGAGAATCTGTGAATGATATTACTACTTGTCCTGCAAA AAATGATCTATGATACTCCAAAGGAGTTCATGAAGTGCAACATTACCAGTTTTTTTTAAAAAAA TTTCATGAAGTGCATAACAATATTCTAGTGATTCAAATGGCTATCCATCTGTTACTGGGAATAC AGCTGGTTGACATTTGTTCTCTGTCTATGCTATTTCTACTTCTTATATAGCAGTCCTTTGACCT GAACAATCAAATGAAATTTTCGTCCCTTAGCATTTTGCTTGTTGGAATTAAATGCAGCTTAAGC AAAACCTATTTAACTTTTCAGTGGATATGTTCTCCTATTGCACATTTTCCTGAGACATGGTCCA ATACATGATGACCCTTTCAGCTTTTTGCTTGTCCAGAATATGGGTATGTGCAATTGTATGATGT TCGTAATTGTTATGAGGAATGATGAGATCCCAGTTATTTTTATCTGATCAGTCATTTTAACCTC AATTCTGTTACAAAAAAAATGATGAGATCCCAGATCTGATCAATTATGCCTTTATGCCAATTTG AAAATTGCAAAGTAATTCTATTTGAGAACCTTTTTTTTTTTAAATGCTAATATGCTTCTCAATA TGCAGGCTGGCTGGAATGTTAATTGGTTTGTCGTACCTGATTTTGGTATATGGCCTCTATGTTC CAGACTGGTTCTTTGAAATATCTAGTCTTAACATGGAATCACGATCACCAGTTTCAGGATATCG ATTGAGTACTCAAACT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.118865759

Conservation Information
Conserved circRNAs	NA
PMCS	0.118865759

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Yang et al., 2020

circRNA

Detail information of Solyc06g084590.2_circ_g.1

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