Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT4G28710_circ_g.6 |
ID in PlantcircBase | ath_circ_033370 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr4: 14179863-14180296 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT4G28710 |
Parent gene annotation |
Myosin-14 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 3 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT4G28710.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.21500067 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
14179923-14180293(+) |
Potential amino acid sequence |
MIQQSLKPGATPQQKTPVSTSLFGRMAMGFRSAPSSAETSAAAEAAAAAVIRPVVAKDPALLFK QQLTAYVEKIFGMIRDNLKNELQTLLSLCIQDEGDNEHLAYWLSNTSTLLFMIQQSLKPGATPQ QKTPVSTSLFGRMAMGFRSAPSSAETSAAAEAAAAAVIRPVVAKDPALLFKQQLTAYVEKIFGM IRDNLKNELQTLLSLCIQDEGDNEHLAYWLSNTSTLLFMIQQSLKPGATPQQKTPVSTSLFGRM AMGFRSAPSSAETSAAAEAAAAAVIRPVVAKDPALLFKQQLTAYVEKIFGMIRDNLKNELQTLL SLCIQDEGDNEHLAYWLSNTSTLLFMIQQSLKPGATPQQKTPVSTSLFGRMAMGFRSAPSSAET SAAAEAAAAAVIRPVVAKDPALLFKQQLTAYVEKIFGMIRDNLKNELQTLLSLCIQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |