Detail information of BGIOSGA031397_circ_g.1


General Information
CircRNA Name BGIOSGA031397_circ_g.1
ID in PlantcircBase osi_circ_008706
Alias Chr10:24061607_24062224(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21205641-21206260  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA031397
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031397_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA031397-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGTAAAAAAAAAGGAATCAGGTGATGGAACAAGTAATGAACAGTATATACAAGAACAGACAA
AAAGGGTGGTTGCTCACCTTTCTTCCTCTCCTGCACctcagcaacaacatcaaagaggctggcc
cggcgcttcttcttgccagggttggtctgccggaggaagtacttctgggcgtggctggccacct
gagtcgcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGCAACAACATCAAAGAGGCTGGCCCGGCGCTTCTTCTTGCCAGGGTTGGTCTGCCGGAGG
AAGTACTTCTGGGCGTGGCTGGCCACCTGAGTCGCCGTCCTGCTGGTCACAAAGTTCTTGGAGA
TGCCTCTCCAGTCCCCTTTCCCCAGCTGCCTCAGCCCTTCCAGGAATTTCTTGTGCTCCTCCTC
AGTCCATGGTACCCCTTCACAGATTAATCAATCAAAGGCAATTAAGTGTCACATGATCTTCACA
GGAAGCAACAAACAGGGAATAATTAATTACTCCTAACTAGTAAAAAGTTTTTCAGGTCTGAGAA
CCTGCTTGTGGATTGTTATCGATGTGTTGTTGACCAATTGACTGACACACAAAAGGTTAATCAT
TTTTCTCTCTCTTTTGGAAGAGGGGATTTTCAACCAATTTTGTTGGTTGCTCAATCAAAGATAA
TATTTTTTTTTGTTTTTTTGCTTTCACGGATCATCAAATTGCGTCAAGAATTAACAGTGAGTTG
GAAGTTTCAGAGTAAAAAAAAAGGAATCAGGTGATGGAACAAGTAATGAACAGTATATACAAGA
ACAGACAAAAAGGGTGGTTGCTCACCTTTCTTCCTCTCCTGCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021