Plant Circular RNA Database

Detail information of Solyc05g013490.2_circ_g.2

			
						 General Information
					
						CircRNA Name
						Solyc05g013490.2_circ_g.2
					
						ID in PlantcircBase
						sly_circ_001690
					
						Alias
						5:6708895|6711557, Slcirc082
					
						Organism
						
							Solanum lycopersicum						
					
						Position
						
							chr5: 6708895-6711557  JBrowse»						
					
						Reference genome
						
							SL2.50.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						Segemehl, CIRI
					
						Parent gene
						
							Solyc05g013490.2						
					
						Parent gene annotation
						
							protein_coding
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Solyc05g013490.2_circ_g.1 						
					
						Support reads
						17/22
					
						Tissues
						fruit/leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Solyc05g013490.2.1:7

General Information
CircRNA Name	Solyc05g013490.2_circ_g.2
ID in PlantcircBase	sly_circ_001690
Alias	5:6708895\|6711557, Slcirc082
Organism	Solanum lycopersicum
Position	chr5: 6708895-6711557 JBrowse»
Reference genome	SL2.50.38
Type	e-circRNA
Identification method	Segemehl, CIRI
Parent gene	Solyc05g013490.2
Parent gene annotation	protein_coding
Parent gene strand	+
Alternative splicing	Solyc05g013490.2_circ_g.1
Support reads	17/22
Tissues	fruit/leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Solyc05g013490.2.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATTTGACCCTCATGTAATAGCTCATCTTTTTCTTGTGGAGTGCAGGAAGGCGCAACCAAATAG
ACACAGATCTCCATCACCACTAAGGTCAAGGAAAAGgtaaagaagaggctgggaatcgacatga
ggcgttctatggttcttcacctttgcctgccaactcttcacatcatcatcatgcccaactaatg
ccagcacc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1951
Transcript exons: 6708895-6709241,6709334-6709528,6709625-6709822,6710080-
6710154,6710231-6710297,6710409-6711423,6711504-6711557
GTAAAGAAGAGGCTGGGAATCGACATGAGGCGTTCTATGGTTCTTCACCTTTGCCTGCCAACTC
TTCACATCATCATCATGCCCAACTAATGCCAGCACCCAATAAAGCTGCAGTGATGGAAGAGCGT
CATTACGTGATGGGTCCTGATCTTAGTGATCAGCCTTTGGATTTTGCACCTCGTTTTAGTCATG
AGCATGACCGGCATTCCCAACCCTATTATGTTCGTGCTGATTCAGGAGGTTCTGTGGGGGGTGC
TGATCCTGTTTCAACAATGCCTTCCAATTATGTGTGGCCTTCTTCTGCTGCTCCTGGTTCTGCA
TATCCTCCTCTTCCTCCAATGCCTCCAGTTGATCCTTCTGTTGTTGGAGCTTCTCCAGCCCCTG
AACATACTGCATCACTCTTTGGAAGGGCACAGAGTTCAAGCTTCCATCCCACTGTCCCGTCAGT
TGGTGCACATTTTGGTGTTGGTGCGGGGGCCGCTCTGCATCCTGCAGCAGCTTTCCCTGCTGAT
GCATATGGGATTTCTGATCGCCCTAAGAAGGCTGCTGTTCCAAACTGGCTTAGAGAGGAAATAA
TAAAGAAGAAAGCTGTCATTACAACTTCAACTGCAGAGCTTCCAAAGGAGGATTCTCAATCTAT
TGAAGATGAAGGTGTCAATAAATCTTATCGGAAAGGTGACCAGGCTGATAGCAAAAGCATTGAT
TCTTCAAGGTCAACCGAGGATGATGATGATGATGAGGTTGAGGTGGAAGCAGCACGAACTGCAG
CAATGAATCAAGAAATAAAGCGTGTCCTAACTGAAGTTCTTTTAAAGGTTACTGATGAGCTATT
TAGTGAGATTGCGACAAGGGTTCTTAGCGAAGAGGATCTCTCTGTTGATGTTGAGCAAAAAACG
GGTGCTTCAAGTCAGAAGGTGTTAACATCTGTTCAAGCTGTTACAACTCCCAAGGCCTCTGCCA
AGGTTCTGATACCACTCAAACCTAAAGATACTCATTCTGTTAATGCCAGTGAAAAGTCTACTTC
CACTTCTCCTGTGGATCTATTAGGCTTGGCTAACTATGCGTCAGATGATGAGGATGACAATGAA
ATCCAGAGTTCTGATAAACAAAAGACCAAAGAGCATGGAAATGGAAAATCACGTGAAGAATCCG
AGGATCATGATAGATCTCCTGCCAACCTGGAGAAAAATCCTCAAAAAATGAGTCCCAATGTCGG
CACTGATGACAGGTCAACTAGATATTCTGCACATGAAGATGCTGGGGGCTCCTTTAAGACTGAA
TCTAGAGTTCCAGAGGATAAGATGCCAGGTGGGAAGGATGCTGTGAAAACTGAAAAGACATCCC
AGACTCCTGACTGCAAAAAGACTAAGATAGATCATTCCAGAAGCGAAGACAAAAGAGATAAGCC
AGATAAGAGCGGTAAACGTGAAGTTAGAAAAGGTTCTGGCACAAATGATAATGGTATGCTTACA
AGCTCAAAGGACAGAAAAACTGAGATAGATGAAGGAAACCATGGGAATCATGAGGAAAGACTAG
CTAGAAAGGAAAAAGTGGGTGATCTAGATGGTTCAAAAGATATTGTGAAGGAGAAAAGCCGTAA
GTCCGGGGAAAAAGCCAAGGAATCTGACTCAAGGAAAAGGCCTTCGCCTTCTAATGTCAAGGAA
GAAAGGAAGGAAAAAGGAAGGGACAGCAGAGCTGGTGTTGCCATAGATAATGGTAGAAAAAGAG
AGAGAACGAAGGATGAAAAGAGAGAAAAATCTAGACGTAAAGATGAAAGGGGCTCCAGCAGACG
TAAAAGGCATCGTTCATCTTCTAATGATAGCAGGGGTAGAGAGAGCAAGGACAAGTCAACCCGT
GCCAATGATCCCAGTGATGAATCTTCAGATGATTCTAGAAGGAAGGCGCAACCAAATAGACACA
GATCTCCATCACCACTAAGGTCAAGGAAAAG
						
					

						Genomic sequence
						
							GTAAAGAAGAGGCTGGGAATCGACATGAGGCGTTCTATGGTTCTTCACCTTTGCCTGCCAACTC
TTCACATCATCATCATGCCCAACTAATGCCAGCACCCAATAAAGCTGCAGTGATGGAAGAGCGT
CATTACGTGATGGGTCCTGATCTTAGTGATCAGCCTTTGGATTTTGCACCTCGTTTTAGTCATG
AGCATGACCGGCATTCCCAACCCTATTATGTTCGTGCTGATTCAGGAGGTTCTGTGGGGGGTGC
TGATCCTGTTTCAACAATGCCTTCCAATTATGTGTGGCCTTCTTCTGCTGCTCCTGGTTCTGCA
TATCCTCCTCTTCCTCCAATGCCTCCAGTTGGGTCTCAGGTTTTAGTTTTAACTTCAAAGTTAA
CTTAAACCCAATGATGCTGTGATTGAGCTTTCCTGTTATCACTTACATACCGCAGGTTGATCCT
TCTGTTGTTGGAGCTTCTCCAGCCCCTGAACATACTGCATCACTCTTTGGAAGGGCACAGAGTT
CAAGCTTCCATCCCACTGTCCCGTCAGTTGGTGCACATTTTGGTGTTGGTGCGGGGGCCGCTCT
GCATCCTGCAGCAGCTTTCCCTGCTGATGCATATGGGATTTCTGATCGCCCTAAGAAGGTTTGT
ACATTGTTCTATGGGCTTTCAGTTTGTAAACCCTTAACCCTAAACTATAGAGTAATGATTCATC
TGTATTATTTGTCTGGTTTTTCCTAGGCTGCTGTTCCAAACTGGCTTAGAGAGGAAATAATAAA
GAAGAAAGCTGTCATTACAACTTCAACTGCAGAGCTTCCAAAGGAGGATTCTCAATCTATTGAA
GATGAAGGTGTCAATAAATCTTATCGGAAAGGTGACCAGGCTGATAGCAAAAGCATTGATTCTT
CAAGGTCAACCGAGGATGATGATGATGATGAGGTCGTTTACTTTCCTTGATTACTCATTTGACA
GAAGATGCTGCTTTTTTGTTGAATTTGTTTCGTCTAAGAAGTCTGTTTACTTGGTTTAATACCC
TTTGTCGAACTATACTGTTCCAATGTATTTATAGGGTTGGAGCTTCCCCCTTTCCAATTCTTCT
TGAGTTATTCGTATTTCCTTTTGGGTAGTCTTTAATTATTATCTTATTCACACCATACTAAGTG
TAGGCTTACCTGAATTTTTATTGGTCCATGCAGGTTGAGGTGGAAGCAGCACGAACTGCAGCAA
TGAATCAAGAAATAAAGCGTGTCCTAACTGAAGTTCTTTTAAAGGTTATTGATGATAAATATGT
GATCGATTTCTTTACATGGTTTTTGCAGATGTATTGACTGGATGCTGTTTTTACAGGTTACTGA
TGAGCTATTTAGTGAGATTGCGACAAGGGTTCTTAGCGAAGAGGATCTCTCTGTTGATGGTTGG
TGTCTCCTATTTCAATTCCTTTCCTCTTTAAATTTCTTCCTTCTCCTTACCTTTGCACTCAGGT
CGTTTATATTTGAGACTTAGTTGTTCTTCTTCCTCCCTTAAGTTGAGCAAAAAACGGGTGCTTC
AAGTCAGAAGGTGTTAACATCTGTTCAAGCTGTTACAACTCCCAAGGCCTCTGCCAAGGTTCTG
ATACCACTCAAACCTAAAGATACTCATTCTGTTAATGCCAGTGAAAAGTCTACTTCCACTTCTC
CTGTGGATCTATTAGGCTTGGCTAACTATGCGTCAGATGATGAGGATGACAATGAAATCCAGAG
TTCTGATAAACAAAAGACCAAAGAGCATGGAAATGGAAAATCACGTGAAGAATCCGAGGATCAT
GATAGATCTCCTGCCAACCTGGAGAAAAATCCTCAAAAAATGAGTCCCAATGTCGGCACTGATG
ACAGGTCAACTAGATATTCTGCACATGAAGATGCTGGGGGCTCCTTTAAGACTGAATCTAGAGT
TCCAGAGGATAAGATGCCAGGTGGGAAGGATGCTGTGAAAACTGAAAAGACATCCCAGACTCCT
GACTGCAAAAAGACTAAGATAGATCATTCCAGAAGCGAAGACAAAAGAGATAAGCCAGATAAGA
GCGGTAAACGTGAAGTTAGAAAAGGTTCTGGCACAAATGATAATGGTATGCTTACAAGCTCAAA
GGACAGAAAAACTGAGATAGATGAAGGAAACCATGGGAATCATGAGGAAAGACTAGCTAGAAAG
GAAAAAGTGGGTGATCTAGATGGTTCAAAAGATATTGTGAAGGAGAAAAGCCGTAAGTCCGGGG
AAAAAGCCAAGGAATCTGACTCAAGGAAAAGGCCTTCGCCTTCTAATGTCAAGGAAGAAAGGAA
GGAAAAAGGAAGGGACAGCAGAGCTGGTGTTGCCATAGATAATGGTAGAAAAAGAGAGAGAACG
AAGGATGAAAAGAGAGAAAAATCTAGACGTAAAGATGAAAGGGGCTCCAGCAGACGTAAAAGGC
ATCGTTCATCTTCTAATGATAGCAGGGGTAGAGAGAGCAAGGACAAGTCAACCCGTGCCAATGA
TCCCAGTGATGAATCTTCAGATGATTCTAGAAGGTTCATTTTTATTTTCTTCTATTTGTGATGC
AATAATTTGACCCTCATGTAATAGCTCATCTTTTTCTTGTGGAGTGCAGGAAGGCGCAACCAAA
TAGACACAGATCTCCATCACCACTAAGGTCAAGGAAAAG
						
					

			
		

Sequences
Splice junction sequence	AATTTGACCCTCATGTAATAGCTCATCTTTTTCTTGTGGAGTGCAGGAAGGCGCAACCAAATAG ACACAGATCTCCATCACCACTAAGGTCAAGGAAAAGgtaaagaagaggctgggaatcgacatga ggcgttctatggttcttcacctttgcctgccaactcttcacatcatcatcatgcccaactaatg ccagcacc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1951 Transcript exons: 6708895-6709241,6709334-6709528,6709625-6709822,6710080- 6710154,6710231-6710297,6710409-6711423,6711504-6711557 GTAAAGAAGAGGCTGGGAATCGACATGAGGCGTTCTATGGTTCTTCACCTTTGCCTGCCAACTC TTCACATCATCATCATGCCCAACTAATGCCAGCACCCAATAAAGCTGCAGTGATGGAAGAGCGT CATTACGTGATGGGTCCTGATCTTAGTGATCAGCCTTTGGATTTTGCACCTCGTTTTAGTCATG AGCATGACCGGCATTCCCAACCCTATTATGTTCGTGCTGATTCAGGAGGTTCTGTGGGGGGTGC TGATCCTGTTTCAACAATGCCTTCCAATTATGTGTGGCCTTCTTCTGCTGCTCCTGGTTCTGCA TATCCTCCTCTTCCTCCAATGCCTCCAGTTGATCCTTCTGTTGTTGGAGCTTCTCCAGCCCCTG AACATACTGCATCACTCTTTGGAAGGGCACAGAGTTCAAGCTTCCATCCCACTGTCCCGTCAGT TGGTGCACATTTTGGTGTTGGTGCGGGGGCCGCTCTGCATCCTGCAGCAGCTTTCCCTGCTGAT GCATATGGGATTTCTGATCGCCCTAAGAAGGCTGCTGTTCCAAACTGGCTTAGAGAGGAAATAA TAAAGAAGAAAGCTGTCATTACAACTTCAACTGCAGAGCTTCCAAAGGAGGATTCTCAATCTAT TGAAGATGAAGGTGTCAATAAATCTTATCGGAAAGGTGACCAGGCTGATAGCAAAAGCATTGAT TCTTCAAGGTCAACCGAGGATGATGATGATGATGAGGTTGAGGTGGAAGCAGCACGAACTGCAG CAATGAATCAAGAAATAAAGCGTGTCCTAACTGAAGTTCTTTTAAAGGTTACTGATGAGCTATT TAGTGAGATTGCGACAAGGGTTCTTAGCGAAGAGGATCTCTCTGTTGATGTTGAGCAAAAAACG GGTGCTTCAAGTCAGAAGGTGTTAACATCTGTTCAAGCTGTTACAACTCCCAAGGCCTCTGCCA AGGTTCTGATACCACTCAAACCTAAAGATACTCATTCTGTTAATGCCAGTGAAAAGTCTACTTC CACTTCTCCTGTGGATCTATTAGGCTTGGCTAACTATGCGTCAGATGATGAGGATGACAATGAA ATCCAGAGTTCTGATAAACAAAAGACCAAAGAGCATGGAAATGGAAAATCACGTGAAGAATCCG AGGATCATGATAGATCTCCTGCCAACCTGGAGAAAAATCCTCAAAAAATGAGTCCCAATGTCGG CACTGATGACAGGTCAACTAGATATTCTGCACATGAAGATGCTGGGGGCTCCTTTAAGACTGAA TCTAGAGTTCCAGAGGATAAGATGCCAGGTGGGAAGGATGCTGTGAAAACTGAAAAGACATCCC AGACTCCTGACTGCAAAAAGACTAAGATAGATCATTCCAGAAGCGAAGACAAAAGAGATAAGCC AGATAAGAGCGGTAAACGTGAAGTTAGAAAAGGTTCTGGCACAAATGATAATGGTATGCTTACA AGCTCAAAGGACAGAAAAACTGAGATAGATGAAGGAAACCATGGGAATCATGAGGAAAGACTAG CTAGAAAGGAAAAAGTGGGTGATCTAGATGGTTCAAAAGATATTGTGAAGGAGAAAAGCCGTAA GTCCGGGGAAAAAGCCAAGGAATCTGACTCAAGGAAAAGGCCTTCGCCTTCTAATGTCAAGGAA GAAAGGAAGGAAAAAGGAAGGGACAGCAGAGCTGGTGTTGCCATAGATAATGGTAGAAAAAGAG AGAGAACGAAGGATGAAAAGAGAGAAAAATCTAGACGTAAAGATGAAAGGGGCTCCAGCAGACG TAAAAGGCATCGTTCATCTTCTAATGATAGCAGGGGTAGAGAGAGCAAGGACAAGTCAACCCGT GCCAATGATCCCAGTGATGAATCTTCAGATGATTCTAGAAGGAAGGCGCAACCAAATAGACACA GATCTCCATCACCACTAAGGTCAAGGAAAAG
Genomic sequence	GTAAAGAAGAGGCTGGGAATCGACATGAGGCGTTCTATGGTTCTTCACCTTTGCCTGCCAACTC TTCACATCATCATCATGCCCAACTAATGCCAGCACCCAATAAAGCTGCAGTGATGGAAGAGCGT CATTACGTGATGGGTCCTGATCTTAGTGATCAGCCTTTGGATTTTGCACCTCGTTTTAGTCATG AGCATGACCGGCATTCCCAACCCTATTATGTTCGTGCTGATTCAGGAGGTTCTGTGGGGGGTGC TGATCCTGTTTCAACAATGCCTTCCAATTATGTGTGGCCTTCTTCTGCTGCTCCTGGTTCTGCA TATCCTCCTCTTCCTCCAATGCCTCCAGTTGGGTCTCAGGTTTTAGTTTTAACTTCAAAGTTAA CTTAAACCCAATGATGCTGTGATTGAGCTTTCCTGTTATCACTTACATACCGCAGGTTGATCCT TCTGTTGTTGGAGCTTCTCCAGCCCCTGAACATACTGCATCACTCTTTGGAAGGGCACAGAGTT CAAGCTTCCATCCCACTGTCCCGTCAGTTGGTGCACATTTTGGTGTTGGTGCGGGGGCCGCTCT GCATCCTGCAGCAGCTTTCCCTGCTGATGCATATGGGATTTCTGATCGCCCTAAGAAGGTTTGT ACATTGTTCTATGGGCTTTCAGTTTGTAAACCCTTAACCCTAAACTATAGAGTAATGATTCATC TGTATTATTTGTCTGGTTTTTCCTAGGCTGCTGTTCCAAACTGGCTTAGAGAGGAAATAATAAA GAAGAAAGCTGTCATTACAACTTCAACTGCAGAGCTTCCAAAGGAGGATTCTCAATCTATTGAA GATGAAGGTGTCAATAAATCTTATCGGAAAGGTGACCAGGCTGATAGCAAAAGCATTGATTCTT CAAGGTCAACCGAGGATGATGATGATGATGAGGTCGTTTACTTTCCTTGATTACTCATTTGACA GAAGATGCTGCTTTTTTGTTGAATTTGTTTCGTCTAAGAAGTCTGTTTACTTGGTTTAATACCC TTTGTCGAACTATACTGTTCCAATGTATTTATAGGGTTGGAGCTTCCCCCTTTCCAATTCTTCT TGAGTTATTCGTATTTCCTTTTGGGTAGTCTTTAATTATTATCTTATTCACACCATACTAAGTG TAGGCTTACCTGAATTTTTATTGGTCCATGCAGGTTGAGGTGGAAGCAGCACGAACTGCAGCAA TGAATCAAGAAATAAAGCGTGTCCTAACTGAAGTTCTTTTAAAGGTTATTGATGATAAATATGT GATCGATTTCTTTACATGGTTTTTGCAGATGTATTGACTGGATGCTGTTTTTACAGGTTACTGA TGAGCTATTTAGTGAGATTGCGACAAGGGTTCTTAGCGAAGAGGATCTCTCTGTTGATGGTTGG TGTCTCCTATTTCAATTCCTTTCCTCTTTAAATTTCTTCCTTCTCCTTACCTTTGCACTCAGGT CGTTTATATTTGAGACTTAGTTGTTCTTCTTCCTCCCTTAAGTTGAGCAAAAAACGGGTGCTTC AAGTCAGAAGGTGTTAACATCTGTTCAAGCTGTTACAACTCCCAAGGCCTCTGCCAAGGTTCTG ATACCACTCAAACCTAAAGATACTCATTCTGTTAATGCCAGTGAAAAGTCTACTTCCACTTCTC CTGTGGATCTATTAGGCTTGGCTAACTATGCGTCAGATGATGAGGATGACAATGAAATCCAGAG TTCTGATAAACAAAAGACCAAAGAGCATGGAAATGGAAAATCACGTGAAGAATCCGAGGATCAT GATAGATCTCCTGCCAACCTGGAGAAAAATCCTCAAAAAATGAGTCCCAATGTCGGCACTGATG ACAGGTCAACTAGATATTCTGCACATGAAGATGCTGGGGGCTCCTTTAAGACTGAATCTAGAGT TCCAGAGGATAAGATGCCAGGTGGGAAGGATGCTGTGAAAACTGAAAAGACATCCCAGACTCCT GACTGCAAAAAGACTAAGATAGATCATTCCAGAAGCGAAGACAAAAGAGATAAGCCAGATAAGA GCGGTAAACGTGAAGTTAGAAAAGGTTCTGGCACAAATGATAATGGTATGCTTACAAGCTCAAA GGACAGAAAAACTGAGATAGATGAAGGAAACCATGGGAATCATGAGGAAAGACTAGCTAGAAAG GAAAAAGTGGGTGATCTAGATGGTTCAAAAGATATTGTGAAGGAGAAAAGCCGTAAGTCCGGGG AAAAAGCCAAGGAATCTGACTCAAGGAAAAGGCCTTCGCCTTCTAATGTCAAGGAAGAAAGGAA GGAAAAAGGAAGGGACAGCAGAGCTGGTGTTGCCATAGATAATGGTAGAAAAAGAGAGAGAACG AAGGATGAAAAGAGAGAAAAATCTAGACGTAAAGATGAAAGGGGCTCCAGCAGACGTAAAAGGC ATCGTTCATCTTCTAATGATAGCAGGGGTAGAGAGAGCAAGGACAAGTCAACCCGTGCCAATGA TCCCAGTGATGAATCTTCAGATGATTCTAGAAGGTTCATTTTTATTTTCTTCTATTTGTGATGC AATAATTTGACCCTCATGTAATAGCTCATCTTTTTCTTGTGGAGTGCAGGAAGGCGCAACCAAA TAGACACAGATCTCCATCACCACTAAGGTCAAGGAAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.557722179

Conservation Information
Conserved circRNAs	NA
PMCS	0.557722179

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							6708985-6708895(+)
6708922-6711419(-)
						
						Potential amino acid sequence
						
							MPAPNKAAVMEERHYVMGPDLSDQPLDFAPRFSHEHDRHSQPYYVRADSGGSVGGADPVSTMPS
NYVWPSSAAPGSAYPPLPPMPPVDPSVVGASPAPEHTASLFGRAQSSSFHPTVPSVGAHFGVGA
GAALHPAAAFPADAYGISDRPKKAAVPNWLREEIIKKKAVITTSTAELPKEDSQSIEDEGVNKS
YRKGDQADSKSIDSSRSTEDDDDDEVEVEAARTAAMNQEIKRVLTEVLLKVTDELFSEIATRVL
SEEDLSVDVEQKTGASSQKVLTSVQAVTTPKASAKVLIPLKPKDTHSVNASEKSTSTSPVDLLG
LANYASDDEDDNEIQSSDKQKTKEHGNGKSREESEDHDRSPANLEKNPQKMSPNVGTDDRSTRY
SAHEDAGGSFKTESRVPEDKMPGGKDAVKTEKTSQTPDCKKTKIDHSRSEDKRDKPDKSGKREV
RKGSGTNDNGMLTSSKDRKTEIDEGNHGNHEERLARKEKVGDLDGSKDIVKEKSRKSGEKAKES
DSRKRPSPSNVKEERKEKGRDSRAGVAIDNGRKRERTKDEKREKSRRKDERGSSRRKRHRSSSN
DSRGRESKDKSTRANDPSDESSDDSRRKAQPNRHRSPSPLRSRKR*(+)
MSIPSLFFTFSLTLVVMEICVYLVAPSF*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						fruit ripening

Functional Information
Coding potential	Y
Potential coding position	6708985-6708895(+) 6708922-6711419(-)
Potential amino acid sequence	MPAPNKAAVMEERHYVMGPDLSDQPLDFAPRFSHEHDRHSQPYYVRADSGGSVGGADPVSTMPS NYVWPSSAAPGSAYPPLPPMPPVDPSVVGASPAPEHTASLFGRAQSSSFHPTVPSVGAHFGVGA GAALHPAAAFPADAYGISDRPKKAAVPNWLREEIIKKKAVITTSTAELPKEDSQSIEDEGVNKS YRKGDQADSKSIDSSRSTEDDDDDEVEVEAARTAAMNQEIKRVLTEVLLKVTDELFSEIATRVL SEEDLSVDVEQKTGASSQKVLTSVQAVTTPKASAKVLIPLKPKDTHSVNASEKSTSTSPVDLLG LANYASDDEDDNEIQSSDKQKTKEHGNGKSREESEDHDRSPANLEKNPQKMSPNVGTDDRSTRY SAHEDAGGSFKTESRVPEDKMPGGKDAVKTEKTSQTPDCKKTKIDHSRSEDKRDKPDKSGKREV RKGSGTNDNGMLTSSKDRKTEIDEGNHGNHEERLARKEKVGDLDGSKDIVKEKSRKSGEKAKES DSRKRPSPSNVKEERKEKGRDSRAGVAIDNGRKRERTKDEKREKSRRKDERGSSRRKRHRSSSN DSRGRESKDKSTRANDPSDESSDDSRRKAQPNRHRSPSPLRSRKR(+) MSIPSLFFTFSLTLVVMEICVYLVAPSF(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	fruit ripening

			
						 Other Information
					
						References
						Tan et al., 2017; Yin et al., 2018; Wang et al., 2018b

circRNA

Detail information of Solyc05g013490.2_circ_g.2

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